CuGenDBv2

Gene ID	Spg023360
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	replication protein A 70 kDa DNA-binding subunit A-like
Genome location	scaffold13:9878963..9883352
RNA-Seq Expression	Spg023360
Synteny	Spg023360
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold IPR013955 - Replication factor A, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG5520322.1 hypothetical protein RHGRI_033033 [Rhododendron griersonianum]

2.4e-27

29.18

Show/hide

Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K
        MFNE I+ +    LR + Y I NG VK VN KYA+ ++EIE+ LS  T +EE +    L +  Y+FI + ++ +S    G + D+              K
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K

Query:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF
         GG GK+++                        EG    K K K    A+         G LSM+T   + + ++P   ++   K+R    L    M   
Subjt:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF

Query:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA
            K  E A+ V I D++   +    + YC    +I+ I N + PW+  CK+CN++V P G Q M  C  C D   +   +Y++K+ + DG+   +IT 
Subjt:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA

Query:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE
        FEAAE I G SV       ++ K+E++   K+      A GK Y F  ++DK  + DR+ G  +  E+      + D ET+E+          KK IK+E
Subjt:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE

Query:  R
        +
Subjt:  R

KAG5520324.1 hypothetical protein RHGRI_033033 [Rhododendron griersonianum]

2.4e-27

29.18

Show/hide

Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K
        MFNE I+ +    LR + Y I NG VK VN KYA+ ++EIE+ LS  T +EE +    L +  Y+FI + ++ +S    G + D+              K
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K

Query:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF
         GG GK+++                        EG    K K K    A+         G LSM+T   + + ++P   ++   K+R    L    M   
Subjt:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF

Query:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA
            K  E A+ V I D++   +    + YC    +I+ I N + PW+  CK+CN++V P G Q M  C  C D   +   +Y++K+ + DG+   +IT 
Subjt:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA

Query:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE
        FEAAE I G SV       ++ K+E++   K+      A GK Y F  ++DK  + DR+ G  +  E+      + D ET+E+          KK IK+E
Subjt:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE

Query:  R
        +
Subjt:  R

KAG5560633.1 hypothetical protein RHGRI_003829 [Rhododendron griersonianum]

1.3e-28

29.43

Show/hide

Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K
        MFNE I+ +    LR + Y I NG VK VN KYA+ ++EIE+ LS  T +EE +    L +  Y+FI + ++ +S    G + D+              K
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K

Query:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF
         GG GK+++                        EG    K K K    A+         G LSM+T   + + ++P   ++  +K+R    L  T  +T 
Subjt:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF

Query:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA
            K  E A+ V I D++   +    + YC    +I+ I N + PW+  CK+CN++V P G Q M  C  C D   +   +Y++K+ + DG+   +IT 
Subjt:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA

Query:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE
        FEAAE I G SV       ++ K+E++   K+      A GK Y F  ++DK  + DR+ G  +  E+      + D ET+E+          KK IK+E
Subjt:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE

Query:  R
        +
Subjt:  R

KAG5563555.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]

6.3e-28

29.18

Show/hide

Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K
        MFNE I+ +    LR + Y I NG VK VN KYA+ ++EIE+ LS  T +EE +    L +  Y+FI + ++ +S    G + D+              K
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K

Query:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF
         GG GK+++                        EG    K K K    A+         G LSM+T   + + ++P   ++  +K+R    L    M   
Subjt:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF

Query:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA
            K  E A+ V I D++   +    + YC    +I+ I N + PW+  CK+CN++V P G Q M  C  C D   +   +Y++K+ + DG+   +IT 
Subjt:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA

Query:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE
        FEAAE I G SV       ++ K+E++   K+      A GK Y F  ++DK  + DR+ G  +  E+      + D ET+E+          KK IK+E
Subjt:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE

Query:  R
        +
Subjt:  R

KAG5563556.1 hypothetical protein RHGRI_006105 [Rhododendron griersonianum]

6.3e-28

29.18

Show/hide

Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K
        MFNE I+ +    LR + Y I NG VK VN KYA+ ++EIE+ LS  T +EE +    L +  Y+FI + ++ +S    G + D+              K
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEM-ESFGMTGKMIDL--------------K

Query:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF
         GG GK+++                        EG    K K K    A+         G LSM+T   + + ++P   ++  +K+R    L    M   
Subjt:  KGGEGKNER------------------------EGKAKGKGKGKEWSAAIR-------GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTF

Query:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA
            K  E A+ V I D++   +    + YC    +I+ I N + PW+  CK+CN++V P G Q M  C  C D   +   +Y++K+ + DG+   +IT 
Subjt:  IPPSKKMERAKLVSIKDIIHGLV---DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDL-VQFIRKYMLKLKICDGQMTAHITA

Query:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE
        FEAAE I G SV       ++ K+E++   K+      A GK Y F  ++DK  + DR+ G  +  E+      + D ET+E+          KK IK+E
Subjt:  FEAAEVIVGSSVSHYATQILQMKKEDS---KIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVL-------HVKKKIKIE

Query:  R
        +
Subjt:  R

TrEMBL top hits

e value

%identity

Alignment

A0A1S4AI89 replication protein A 70 kDa DNA-binding subunit B-like

1.7e-23

29.27

Show/hide

Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMES------FGMTGKMIDLKKGGEGKNER
        +FN  IE   N + +NK   I NG + + N  + +V+ E+E+    ST +EE    F     + NFI   E         FG+  K + L       N +
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMES------FGMTGKMIDLKKGGEGKNER

Query:  EGKAKGKGKGKEWSAAIR----GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIP--PSKKMERAKLVSIKDIIHGLVDDLYCCIIGSI
          +     K    +  IR     G  S++TT  S I+I P F  +  L++  +         + +P    K     K+  +KD      +D Y      I
Subjt:  EGKAKGKGKGKEWSAAIR----GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIP--PSKKMERAKLVSIKDIIHGLVDDLYCCIIGSI

Query:  VEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQ
         +I+NKD PW+  CK C ++V  +    +T C+ C  + V +  +Y+LKL++ D +   ++T FE+   ++G  V+ Y   I Q  KE+SK YR  +L+ 
Subjt:  VEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQ

Query:  GKTYKFLVRMDKKFEGDRSKGHFVVQEI
         K + FLV++D K  GDR    F+V+EI
Subjt:  GKTYKFLVRMDKKFEGDRSKGHFVVQEI

A0A1S4BAI4 replication protein A 70 kDa DNA-binding subunit B-like

1.3e-26

29.36

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Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMES------FGMTGKMIDLKKG-GEGKNE
        +FN  IE   N + +NK Y I NG + + N  + +V+ E+E+    +T +EE    F     + NFI   E         F + G ++D+K   GEG  +
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMES------FGMTGKMIDLKKG-GEGKNE

Query:  R------------------------EGKAKGK---GKGKEWSAAIR----GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKME
        R                        +G+   K    K    +  +R     G  S++TT  S+I+I P F  +  L++  +       +   + PS +++
Subjt:  R------------------------EGKAKGK---GKGKEWSAAIR----GGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKME

Query:  RAKLVSIKDIIHGLVD---DLYCCIIGSIVEIVNKDNPWFEKCKLCNQRV-YPNGSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIV
         A+ V I+DI     D   D Y      I +I+NKD PW+  CK C ++V   N   K  HC   N  V +  +Y+LKL++ D +   ++T FE+   ++
Subjt:  RAKLVSIKDIIHGLVD---DLYCCIIGSIVEIVNKDNPWFEKCKLCNQRV-YPNGSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIV

Query:  GSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVE
        G  V+ Y   I Q KKE+ K YR  +L++ K + FLV++D K  GDR    F+ +EI +VE
Subjt:  GSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVE

A0A1S4BU38 replication protein A 70 kDa DNA-binding subunit B-like

8.8e-20

29.79

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Query:  GELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHG----LVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRV
        G   ++TT  S+++  P F  +  L+     +       T + PS+ +++A+ V I DI H       +D Y      I +I+N D+PW+  CK C ++V
Subjt:  GELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHG----LVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRV

Query:  YPNGSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGH
          +    +  C  C   V++  +Y+LKL++ D +   +IT FEA + ++G  V+ Y   I Q KKE+SK YR  + ++ K + FLV++D +  GDR    
Subjt:  YPNGSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGH

Query:  FVVQEINKV----EVEESDLETLEVLHVKKKIKIE
         + +E+++V     +E +D E      +KK  +IE
Subjt:  FVVQEINKV----EVEESDLETLEVLHVKKKIKIE

M1DP79 Replication factor A

6.5e-23

26.85

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Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESFGMTGKMIDL-----------KKGGE
        +FN+ I+T  + +  NK Y I  G +  VN  Y +V++EIE+T++ +T I++ +     H  +  F+ +   E     G + DL            KG  
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESFGMTGKMIDL-----------KKGGE

Query:  GKN---------------------EREGKAKGKGKGK-------EWSAAIRGGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKM
         +                      E +G    K K         +   +I  G   ++T   S++LI P F  + DL+  RE++       T   PSK M
Subjt:  GKN---------------------EREGKAKGKGKGK-------EWSAAIRGGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKM

Query:  ERAKLVSIKDIIHGLVDDLYCCII---GSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEVI
         +A  V++ +I+ G + D    +      IV+I+N + PW+  CK C+++V     Q    C NCN    ++  +Y L+L++CD +  A +T F+AA+++
Subjt:  ERAKLVSIKDIIHGLVDDLYCCII---GSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEVI

Query:  VGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVE-------VEESDLETLEVLHVKKKIKIER
        +G +V  Y  +    K E+S  YRN + ++ K +KFLVR+D            + QEI+ VE        +ES  +T       K   +ER
Subjt:  VGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVE-------VEESDLETLEVLHVKKKIKIER

M1DXI7 Replication protein A1

3.8e-23

26.91

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Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESFGMTGKMIDL----------KKGGEG
        +FN+ IET  + +  NK Y I  G    VN  Y++V++E+E+  + +T I+E +      K +  F+ +   ++    G ++DL           +    
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESFGMTGKMIDL----------KKGGEG

Query:  KN----------------------EREGKAKGKGKGK-------EWSAAIRGGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKM
        K                       E +G    K K         +   +I  G   ++T   S++LI P F  + DL+  RE +++       + P+K M
Subjt:  KN----------------------EREGKAKGKGKGK-------EWSAAIRGGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKM

Query:  ERAKLVSIKDIIHGLV----DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEV
        +RA  V +  I++GL+    D +Y     +IV+I+NKD PW+  CK C ++V     ++   C NCN D V++  +Y L+L++C G+  A +  FEAA  
Subjt:  ERAKLVSIKDIIHGLV----DDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITAFEAAEV

Query:  IVGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVLHVKK
        ++G             KKE+   YRN +L++ K + FLVR+D      R     + +EI++++ E   +   EV  V+K
Subjt:  IVGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVLHVKK

SwissProt top hits

e value

%identity

Alignment

Q5ZJJ2 Replication protein A 70 kDa DNA-binding subunit

1.7e-04

21.93

Show/hide

Query:  FNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMES---------FGMTGKMIDLKKGGEGKN
        FN+  +     I  NK Y    GN+K  N +Y  V  + E+T ++ T++   ++   L  + ++F+ IS++E+          G+     D+ K     +
Subjt:  FNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMES---------FGMTGKMIDLKKGGEGKN

Query:  EREGKAKG----KGKGKEWSAAIRGGEL------------------------SMATTMTSNILIEPDFVDSKDLK---ERRELLLDHTYMSTFIPPS---
         RE   +        GK  +A + G E                         S++   +S +++ PD  ++  L+   +    LL+   +S     S   
Subjt:  EREGKAKG----KGKGKEWSAAIRGGEL------------------------SMATTMTSNILIEPDFVDSKDLK---ERRELLLDHTYMSTFIPPS---

Query:  -----KKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKC--KLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITA
             K +  AK    + +  G   D + C +G+IV +  K+N  ++ C  + CN++V  +    +  C  C+ +   F  + ML + I D      +T 
Subjt:  -----KKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKC--KLCNQRVYPNGSQKMTHCNNCN-DLVQFIRKYMLKLKICDGQMTAHITA

Query:  F-EAAEVIVGSSVSHYATQILQMKKEDSKIYRN-FILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEE
        F E+AE I+G S    AT + ++K ++ + +   F  A   TY+F +R+  +   D S+      ++  V   E
Subjt:  F-EAAEVIVGSSVSHYATQILQMKKEDSKIYRN-FILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEE

Arabidopsis top hits

e value

%identity

Alignment

AT5G45400.1 Replication factor-A protein 1-related

1.4e-04

19.7

Show/hide

Query:  FNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESF--------------------------
        FN+ ++   + I+    YLI  GN+K     + ++  + E+ L S++TI+  E+   + +  ++F  I ++E+                           
Subjt:  FNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESF--------------------------

Query:  -----------GMTGKMIDLKKGGEGKNEREGKAKGK-GKGKEWSAAIRGGEL------SMATTMTSNILIEPDFVDSKDLK---ERRELLLDHTYMS-T
                    M+G+ +++   G   N    K +     G     A++ G +       ++T   S   IEPDF ++++L+   ER       T +S  
Subjt:  -----------GMTGKMIDLKKGGEGKNEREGKAKGK-GKGKEWSAAIRGGEL------SMATTMTSNILIEPDFVDSKDLK---ERRELLLDHTYMS-T

Query:  FIPPSKKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKCKL------CNQRVYPN--GSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMT
        F    ++  R  +  IKD   G  +      + + +  +  +N  +  C +      C+++V  N  G+ +   C+ C D   +  +Y+L++++ D    
Subjt:  FIPPSKKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKCKL------CNQRVYPN--GSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMT

Query:  AHITAF-EAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQGKT-YKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVLHVKKKIKI
           TAF EA E I+G S        ++ + +D + + + I +   T Y F +++ ++   D  +    V +  K+    +    LE +    K+KI
Subjt:  AHITAF-EAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQGKT-YKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVLHVKKKIKI

AT5G61000.1 Replication factor-A protein 1-related

6.7e-04

20.59

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Query:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI--EEPFPLHKLTYNFIQISEMESFGMTGKMIDL--------------
        MFN+      +     K Y I  G++K  N ++  V  + EMTL+ ++ +EE   EE F + +  +NF+ I E+  +    ++IDL              
Subjt:  MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEI--EEPFPLHKLTYNFIQISEMESFGMTGKMIDL--------------

Query:  -KKGGEGKNERE---------------GKAKGKGKGKEW-----------SAAIRGGE---LSMATTMTSNILIEPDFVDSKDLK-----ERRELLLDHT
         +   E   +R+                     G G+E              +++ G+   +S++T   SN++I P+  ++K LK     E +E+ +  +
Subjt:  -KKGGEGKNERE---------------GKAKGKGKGKEW-----------SAAIRGGE---LSMATTMTSNILIEPDFVDSKDLK-----ERRELLLDHT

Query:  YMSTFIPPSKKMERAKLVSIKDIIHGLVDD--------LYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNC-NDLVQFIRKYMLKLKIC
         + + + PS K     L + + ++  +  +        ++      I  I      W++ CK CN++V          C  C     +   +Y++ +K+ 
Subjt:  YMSTFIPPSKKMERAKLVSIKDIIHGLVDD--------LYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNC-NDLVQFIRKYMLKLKIC

Query:  DGQMTAHITAF-EAAEVIVGSSVSHYATQILQMKKEDSKI
        D      I++F + AE I+G S    A ++ ++K E+ ++
Subjt:  DGQMTAHITAF-EAAEVIVGSSVSHYATQILQMKKEDSKI

Sequences

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CDS sequence

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ATGTTCAACGAAGTTATAGAAACCATCGGAAATGGTATTTTAAGGAATAAATTTTATTTGATTGAAAATGGAAATGTGAAAAATGTGAATGGTAAATATGCAAAT
GTAAATGAAGAGATTGAAATGACCTTGTCTTCATCTACGACGATCGAAGAAATTGAAGAACCATTTCCTCTTCATAAATTGACGTATAATTTCATCCAAATTTCT
GAGATGGAATCATTTGGGATGACAGGAAAAATGATAGATCTGAAAAAGGGAGGGGAAGGGAAAAACGAAAGGGAAGGGAAAGCGAAAGGAAAGGGAAAGGGGAAG
GAGTGGTCGGCGGCGATTCGAGGGGGAGAATTAAGCATGGCAACAACCATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAA
CGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGG
TTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTAT
CCCAATGGAAGTCAGAAAATGACTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACT
GCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGATGAAAAAGGAGGATTCCAAAATTTAT
CGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATA
AATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAG

mRNA sequence

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Protein sequence

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MFNEVIETIGNGILRNKFYLIENGNVKNVNGKYANVNEEIEMTLSSSTTIEEIEEPFPLHKLTYNFIQISEMESFGMTGKMIDLKKGGEGKNEREGKAKGKGKGK
EWSAAIRGGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVY
PNGSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEI
NKVEVEESDLETLEVLHVKKKIKIER

Spg023360 (gene) of Sponge gourd (cylindrica) v1 genome