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Spg023391 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023391
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpeptide chain release factor PrfB2, chloroplastic
Genome locationscaffold13:9669458..9669745
RNA-Seq ExpressionSpg023391
SyntenySpg023391
Gene Ontology termsGO:0006415 - translational termination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016149 - translation release factor activity, codon specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135582.1 peptide chain release factor PrfB2, chloroplastic [Cucumis sativus]9.6e-1964.21Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEI AFERELLEHIDMIKLA E       + +LE+ S++   T +      RE E E+
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
XP_022931672.1 peptide chain release factor PrfB2, chloroplastic [Cucurbita moschata]2.5e-1967.03Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEIKAFERELLEHIDMIKLA E       + +LE+ S++ L +  ++ K  E E
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
XP_022989394.1 peptide chain release factor PrfB2, chloroplastic [Cucurbita maxima]5.6e-1965.93Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKE+KAFERELLEHIDMIKLA E       + +LE+ S++ L +  ++ K  E E
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
XP_023531900.1 peptide chain release factor PrfB2, chloroplastic [Cucurbita pepo subsp. pepo]2.5e-1967.03Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEIKAFERELLEHIDMIKLA E       + +LE+ S++ L +  ++ K  E E
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
XP_038878322.1 peptide chain release factor PrfB2, chloroplastic isoform X1 [Benincasa hispida]3.3e-1968.13Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
        MMRLE LSVEL KADLWDD  HAGKISREHGSIM KIKEIKAFERELLEHIDMIKLA E       + +LE  SI+ L T  ++ K  E E
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
TrEMBL top hitse value%identityAlignment
A0A0A0LVX3 RF_PROK_I domain-containing protein4.6e-1964.21Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEI AFERELLEHIDMIKLA E       + +LE+ S++   T +      RE E E+
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
A0A1S4DY60 peptide chain release factor PrfB2, chloroplastic4.6e-1964.21Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEI AFERELLEHIDMIKLA E       + +LE+ S++   T +      RE E E+
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
A0A5D3CEK4 Peptide chain release factor PrfB24.6e-1964.21Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEI AFERELLEHIDMIKLA E       + +LE+ S++   T +      RE E E+
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES
A0A6J1EUC0 peptide chain release factor PrfB2, chloroplastic1.2e-1967.03Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKEIKAFERELLEHIDMIKLA E       + +LE+ S++ L +  ++ K  E E
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
A0A6J1JP75 peptide chain release factor PrfB2, chloroplastic2.7e-1965.93Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
        MMRLELLSVEL KADLWDD  HAGKISREHGSIM KIKE+KAFERELLEHIDMIKLA E       + +LE+ S++ L +  ++ K  E E
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIH-LSTTHKSGKTLERE
SwissProt top hitse value%identityAlignment
F4I532 Peptide chain release factor PrfB2, chloroplastic1.1e-1761.97Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLE
        ++RL++LS EL K+DLWDD THAGKISREHGS+  K+K +  FERELLEHIDM+KLA E   S L++  L+
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLE
Q2W3F8 Peptide chain release factor 21.1e-0435.71Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLAS-EGERSILKNPD
        +MRL+ L+   E  DLW+DA  A KI RE   +   I+  +A EREL +  ++I+L   EG+++++ + +
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLAS-EGERSILKNPD
Arabidopsis top hitse value%identityAlignment
AT1G56350.1 Peptide chain release factor 27.8e-1961.97Show/hide
Query:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLE
        ++RL++LS EL K+DLWDD THAGKISREHGS+  K+K +  FERELLEHIDM+KLA E   S L++  L+
Subjt:  MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGATTGGAGTTGTTGTCGGTGGAGTTGGAGAAGGCTGATCTGTGGGATGATGCTACACATGCAGGGAAGATAAGTCGGGAGCATGGTTCAATTATGGAT
AAGATTAAAGAGATCAAAGCATTTGAGAGAGAGTTGCTTGAGCATATCGACATGATAAAGCTTGCCAGTGAGGGAGAGAGATCGATCTTGAAAAACCCAGATCTG
GAAAACTCTTCAATCCATTTGTCTACTACGCACAAATCTGGAAAAACTCTCGAGAGGGAGACAGAGACCGAGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAGATTGGAGTTGTTGTCGGTGGAGTTGGAGAAGGCTGATCTGTGGGATGATGCTACACATGCAGGGAAGATAAGTCGGGAGCATGGTTCAATTATGGAT
AAGATTAAAGAGATCAAAGCATTTGAGAGAGAGTTGCTTGAGCATATCGACATGATAAAGCTTGCCAGTGAGGGAGAGAGATCGATCTTGAAAAACCCAGATCTG
GAAAACTCTTCAATCCATTTGTCTACTACGCACAAATCTGGAAAAACTCTCGAGAGGGAGACAGAGACCGAGAGTTAG
Protein sequenceShow/hide protein sequence
MMRLELLSVELEKADLWDDATHAGKISREHGSIMDKIKEIKAFERELLEHIDMIKLASEGERSILKNPDLENSSIHLSTTHKSGKTLERETETES