; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023410 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023410
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold13:11451641..11453949
RNA-Seq ExpressionSpg023410
SyntenySpg023410
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]2.6e-1130.26Show/hide
Query:  KRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCI
        K++ F+   IN+ F L+D+ +       +  D +    VL  +     +W+G  T+R ++  + L   A  W H++KN++M T+H+ T+SL R++L++ I
Subjt:  KRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCI

Query:  MKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP
        M   PID+G I+V+ +     K   A+    L+T LCR   +     +EI P
Subjt:  MKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP

KAE8718449.1 hypothetical protein F3Y22_tig00110013pilonHSYRG00240 [Hibiscus syriacus]2.2e-1028.76Show/hide
Query:  KRVAFSFAHINNVFELRDIPNAEGNALL-DYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYC
        K++ F+   IN  F L+++   +G+A+  +  D +    VL  +     +W+G  T+R ++  + L   A  W H++K+++M T+H+ T+SL R++L++ 
Subjt:  KRVAFSFAHINNVFELRDIPNAEGNALL-DYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYC

Query:  IMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP
        ++   PID+G+I+V+ +     K   A+    L+T LCR   +     +EI P
Subjt:  IMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP

MCH80834.1 hypothetical protein [Trifolium medium]2.6e-1130.26Show/hide
Query:  VAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR--TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIM
        + +S A+INN + L+     E   L+D + D+ L+AV+  +  PG +W          +K   L  E   W   +K+ I+ TTH+ T++  R++L++CIM
Subjt:  VAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR--TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIM

Query:  KGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVP-ATDEEIRP
        +  PI++G+I+ + +   + + +G ++   L+T LC+A  +   ATDE   P
Subjt:  KGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVP-ATDEEIRP

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]5.8e-1128.73Show/hide
Query:  VAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTARTLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIMKG
        V++S   IN++ EL     ++ + L     D+ L  +L  VA  G  W   G AR LK Q L  EAN W +++++ I   +HD  L L+RV+++YCI++ 
Subjt:  VAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTARTLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIMKG

Query:  TPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRPMRKDFDDQWWVRVTSTRDRRLQGSTQQPAPAS
         P D+G+++   +     +  G +    L+ RL + + ++ A  +++  M K   D    +    R  R+  + Q  AP S
Subjt:  TPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRPMRKDFDDQWWVRVTSTRDRRLQGSTQQPAPAS

XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]1.1e-0931.25Show/hide
Query:  EEGEAIHLREEQEKAAAEETAC--KAAADEKAAKEKEGSSKPAAVPNKKRKAPTASKSKGK--EKVGAGKEKVGEEW-GKFHEKR---------VAFSFA
        +E E   L+EE+EK       C  K    E A +EKE   K      ++      +K KGK  EK       V + + G+ H  R         V+FS  
Subjt:  EEGEAIHLREEQEKAAAEETAC--KAAADEKAAKEKEGSSKPAAVPNKKRKAPTASKSKGK--EKVGAGKEKVGEEW-GKFHEKR---------VAFSFA

Query:  HINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWD-GHGTARTLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIMKGTPIDL
         IN +++++D P A GN ++D   +  +   L  + + G KW        TL  + L  E   W++ VK R++ TTHD T+S  RV+  YCI++  PID+
Subjt:  HINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWD-GHGTARTLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIMKGTPIDL

Query:  GQILVKTL
        GQ++ + L
Subjt:  GQILVKTL

TrEMBL top hitse value%identityAlignment
A0A392M2J7 Uncharacterized protein (Fragment)1.3e-1130.26Show/hide
Query:  VAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR--TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIM
        + +S A+INN + L+     E   L+D + D+ L+AV+  +  PG +W          +K   L  E   W   +K+ I+ TTH+ T++  R++L++CIM
Subjt:  VAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR--TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCIM

Query:  KGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVP-ATDEEIRP
        +  PI++G+I+ + +   + + +G ++   L+T LC+A  +   ATDE   P
Subjt:  KGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVP-ATDEEIRP

A0A6A2WM54 Uncharacterized protein1.3e-1130.26Show/hide
Query:  KRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCI
        K++ F+   IN+ F L+D+ +       +  D +    VL  +     +W+G  T+R ++  + L   A  W H++KN++M T+H+ T+SL R++L++ I
Subjt:  KRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCI

Query:  MKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP
        M   PID+G I+V+ +     K   A+    L+T LCR   +     +EI P
Subjt:  MKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP

A0A6A2YMQ9 Uncharacterized protein3.4e-0927.63Show/hide
Query:  KRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCI
        K++ F+ + I   F L+D+ +       +  D +    VL  +     +W+G  T+R ++  + L   A  W H++K+++M T+++ T+SL R++L++ I
Subjt:  KRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYCI

Query:  MKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP
         +  PID+G+I+V+ ++    K   A+    L+T LCR   +     +EI P
Subjt:  MKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP

A0A6A3ASF6 Uncharacterized protein1.2e-0928.1Show/hide
Query:  KRVAFSFAHINNVFELRDIPNAEGNALL-DYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYC
        K++ F+   IN  F L+++   +G+A+L +  D +    VL  +     +W+G  T+R ++  + L   A  W H++K+++M T+H+  +SL R++L++ 
Subjt:  KRVAFSFAHINNVFELRDIPNAEGNALL-DYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYC

Query:  IMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP
        ++   PID+G+I+V+ +     K   A+    L+T LC    +     +EI P
Subjt:  IMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP

A0A6A3BU96 Uncharacterized protein1.1e-1028.76Show/hide
Query:  KRVAFSFAHINNVFELRDIPNAEGNALL-DYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYC
        K++ F+   IN  F L+++   +G+A+  +  D +    VL  +     +W+G  T+R ++  + L   A  W H++K+++M T+H+ T+SL R++L++ 
Subjt:  KRVAFSFAHINNVFELRDIPNAEGNALL-DYLDDDLLSAVLLAVARPGGKWDGHGTAR-TLKLQLLDFEANWWMHWVKNRIMLTTHDATLSLQRVILVYC

Query:  IMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP
        ++   PID+G+I+V+ +     K   A+    L+T LCR   +     +EI P
Subjt:  IMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGATTCCCAAAACCTCTCAGTGTCTGGCTATGCGGATGATGCCTCCCCTTCATCGTCGGAGGTGGAAGGACCTCTCCGAGACGCCATTTCCTCCCTTAGTGAGGA
AAATGAGAACCAAACCGAGGGAAAGCCAAGCCAAGACTCCATGGAAACAGAGGAGAATGAGGTCATCAACGTCGAGCAAACTCCCATGGCCGAACCTTCCATCTCCACAG
CCAACCCTTCAGAGGTGCTCAATATTGCACCTCTGAACACTTCTACCTTCACCGTCCAACCCGTCACCCTCCAACCTGCCCAAAACATCTCCATCCCTCGAAACCTAACC
CCATTTCCATCCCCATTCCCTTTGGTACCCCTCCTTCTTCCACCCCCAGATTCTTCAGCTTCTCTCGCATCAACCACCAACCCTTCATCTTCTTCCTCTTCGCCCGCAAA
CACTTCCCACCCACCATCCACCTCAGCGCAACCCACTTCGTCGCAGTTTTATGAGTGGGAAGTGGCCGCATGGAACTCCTTGATGGGAGAATTAGGCGAGGAAGGCGAAG
CAATTCATCTGCGAGAAGAACAAGAAAAGGCTGCCGCAGAGGAAACCGCATGCAAGGCAGCCGCAGATGAAAAAGCAGCCAAAGAAAAAGAGGGCTCCAGCAAACCTGCG
GCAGTCCCAAACAAGAAACGGAAAGCGCCCACCGCATCCAAAAGCAAAGGAAAAGAAAAAGTGGGCGCAGGAAAAGAAAAAGTGGGCGAGGAATGGGGGAAGTTCCATGA
AAAACGAGTCGCATTCTCCTTCGCACACATCAACAATGTATTCGAGCTGCGAGACATCCCAAATGCAGAAGGGAATGCGCTCCTCGACTATCTCGACGATGACTTACTGA
GCGCAGTACTTCTTGCGGTGGCCCGACCTGGAGGCAAATGGGACGGCCACGGCACTGCGAGGACCCTGAAGTTGCAGCTGCTCGACTTCGAGGCCAATTGGTGGATGCAT
TGGGTGAAGAATCGCATCATGCTCACAACGCATGATGCCACATTGAGCCTCCAACGGGTAATTCTGGTTTATTGCATCATGAAGGGAACCCCAATCGACTTGGGCCAAAT
CCTCGTCAAAACATTGAGTCAGACTACCGCAAAACCTAAGGGCGCAATGTTTTGCCTAGGCCTTGTCACTCGGTTATGTCGCGCATCTGGCCTCGTGCCCGCAACAGATG
AAGAAATCCGACCCATGCGGAAGGATTTTGACGACCAATGGTGGGTGCGCGTAACCAGCACCCGCGATAGGCGTTTGCAAGGAAGCACGCAGCAACCAGCTCCCGCATCC
CAACCCACCGAACCTACAGCTCTTGCGCCTGAGAAGCCAAAGAAAAAAAGGCGCAAGCAAACTGTGGGCAGGAAAGCACTGTCTGCACCCAACCTCAGGGATCCTTGCCA
CCACAGCAAGAAAGCTTGCCACCGCCACCTCCGCCACCGCCACCTCCAATTCCCCACTCGCAATGATGAAGTTCCTGCGCCGAACCTCTCACCGCAAGCCACAGCTTCTG
CGAGCACAACTCAGGTTGGGACTGATCTACTGATTGATGTGGATTCAGCCCTTATCTTTTCAGAGCTGCGGTGGATAATTCTAGAAAGTGTAGAGCCCCTACGCCGGCAG
CAAGAAAGGATGTGCCAGCAACAAGAGTTGTTGCGCAAGCAACAAGACGAACTGTCGCAGTGGGTAAATGCTTTAGTCCTTTTTCTAATGCCATGGACTGAAGGTTTTGG
CCGCTTGCCAGTCACGCCAAACTTGTTTGCACGACCTGCTGGGCAACAAAGACCCCCTAGCGCAGGCCCATCACAAGTACGCGGATCCATGCCTCCGCCTGCGCCGAGGG
AGACAAGACCACCTCCACCACCACCACCGCAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGATTCCCAAAACCTCTCAGTGTCTGGCTATGCGGATGATGCCTCCCCTTCATCGTCGGAGGTGGAAGGACCTCTCCGAGACGCCATTTCCTCCCTTAGTGAGGA
AAATGAGAACCAAACCGAGGGAAAGCCAAGCCAAGACTCCATGGAAACAGAGGAGAATGAGGTCATCAACGTCGAGCAAACTCCCATGGCCGAACCTTCCATCTCCACAG
CCAACCCTTCAGAGGTGCTCAATATTGCACCTCTGAACACTTCTACCTTCACCGTCCAACCCGTCACCCTCCAACCTGCCCAAAACATCTCCATCCCTCGAAACCTAACC
CCATTTCCATCCCCATTCCCTTTGGTACCCCTCCTTCTTCCACCCCCAGATTCTTCAGCTTCTCTCGCATCAACCACCAACCCTTCATCTTCTTCCTCTTCGCCCGCAAA
CACTTCCCACCCACCATCCACCTCAGCGCAACCCACTTCGTCGCAGTTTTATGAGTGGGAAGTGGCCGCATGGAACTCCTTGATGGGAGAATTAGGCGAGGAAGGCGAAG
CAATTCATCTGCGAGAAGAACAAGAAAAGGCTGCCGCAGAGGAAACCGCATGCAAGGCAGCCGCAGATGAAAAAGCAGCCAAAGAAAAAGAGGGCTCCAGCAAACCTGCG
GCAGTCCCAAACAAGAAACGGAAAGCGCCCACCGCATCCAAAAGCAAAGGAAAAGAAAAAGTGGGCGCAGGAAAAGAAAAAGTGGGCGAGGAATGGGGGAAGTTCCATGA
AAAACGAGTCGCATTCTCCTTCGCACACATCAACAATGTATTCGAGCTGCGAGACATCCCAAATGCAGAAGGGAATGCGCTCCTCGACTATCTCGACGATGACTTACTGA
GCGCAGTACTTCTTGCGGTGGCCCGACCTGGAGGCAAATGGGACGGCCACGGCACTGCGAGGACCCTGAAGTTGCAGCTGCTCGACTTCGAGGCCAATTGGTGGATGCAT
TGGGTGAAGAATCGCATCATGCTCACAACGCATGATGCCACATTGAGCCTCCAACGGGTAATTCTGGTTTATTGCATCATGAAGGGAACCCCAATCGACTTGGGCCAAAT
CCTCGTCAAAACATTGAGTCAGACTACCGCAAAACCTAAGGGCGCAATGTTTTGCCTAGGCCTTGTCACTCGGTTATGTCGCGCATCTGGCCTCGTGCCCGCAACAGATG
AAGAAATCCGACCCATGCGGAAGGATTTTGACGACCAATGGTGGGTGCGCGTAACCAGCACCCGCGATAGGCGTTTGCAAGGAAGCACGCAGCAACCAGCTCCCGCATCC
CAACCCACCGAACCTACAGCTCTTGCGCCTGAGAAGCCAAAGAAAAAAAGGCGCAAGCAAACTGTGGGCAGGAAAGCACTGTCTGCACCCAACCTCAGGGATCCTTGCCA
CCACAGCAAGAAAGCTTGCCACCGCCACCTCCGCCACCGCCACCTCCAATTCCCCACTCGCAATGATGAAGTTCCTGCGCCGAACCTCTCACCGCAAGCCACAGCTTCTG
CGAGCACAACTCAGGTTGGGACTGATCTACTGATTGATGTGGATTCAGCCCTTATCTTTTCAGAGCTGCGGTGGATAATTCTAGAAAGTGTAGAGCCCCTACGCCGGCAG
CAAGAAAGGATGTGCCAGCAACAAGAGTTGTTGCGCAAGCAACAAGACGAACTGTCGCAGTGGGTAAATGCTTTAGTCCTTTTTCTAATGCCATGGACTGAAGGTTTTGG
CCGCTTGCCAGTCACGCCAAACTTGTTTGCACGACCTGCTGGGCAACAAAGACCCCCTAGCGCAGGCCCATCACAAGTACGCGGATCCATGCCTCCGCCTGCGCCGAGGG
AGACAAGACCACCTCCACCACCACCACCGCAGGAGTAG
Protein sequenceShow/hide protein sequence
MSDSQNLSVSGYADDASPSSSEVEGPLRDAISSLSEENENQTEGKPSQDSMETEENEVINVEQTPMAEPSISTANPSEVLNIAPLNTSTFTVQPVTLQPAQNISIPRNLT
PFPSPFPLVPLLLPPPDSSASLASTTNPSSSSSSPANTSHPPSTSAQPTSSQFYEWEVAAWNSLMGELGEEGEAIHLREEQEKAAAEETACKAAADEKAAKEKEGSSKPA
AVPNKKRKAPTASKSKGKEKVGAGKEKVGEEWGKFHEKRVAFSFAHINNVFELRDIPNAEGNALLDYLDDDLLSAVLLAVARPGGKWDGHGTARTLKLQLLDFEANWWMH
WVKNRIMLTTHDATLSLQRVILVYCIMKGTPIDLGQILVKTLSQTTAKPKGAMFCLGLVTRLCRASGLVPATDEEIRPMRKDFDDQWWVRVTSTRDRRLQGSTQQPAPAS
QPTEPTALAPEKPKKKRRKQTVGRKALSAPNLRDPCHHSKKACHRHLRHRHLQFPTRNDEVPAPNLSPQATASASTTQVGTDLLIDVDSALIFSELRWIILESVEPLRRQ
QERMCQQQELLRKQQDELSQWVNALVLFLMPWTEGFGRLPVTPNLFARPAGQQRPPSAGPSQVRGSMPPPAPRETRPPPPPPPQE