; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023416 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023416
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold13:9250896..9253663
RNA-Seq ExpressionSpg023416
SyntenySpg023416
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031318.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]3.5e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

KAA0059897.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]3.5e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

TYK09469.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]3.5e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

TYK23827.1 MuDR family transposase [Cucumis melo var. makuwa]3.5e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]8.5e-3359.66Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R+RMM  N SESL+S+L E R+FP+A+LLDSIR LLQ WFYER  +AS MK+ LT+WAE+ELR +H++SR+F VD I+N ++KV+D DN+++V +  K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVL
        SC  WD +EI CAHA AVL
Subjt:  SCHVWDFDEISCAHALAVL

TrEMBL top hitse value%identityAlignment
A0A5A7T3G5 Protein FAR1-RELATED SEQUENCE 4-like1.7e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

A0A5A7UZ18 Protein FAR1-RELATED SEQUENCE 4-like1.7e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

A0A5A7VG38 Protein FAR1-RELATED SEQUENCE 4-like9.2e-3361.34Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVL
        +C VWD DEI CAHALAVL
Subjt:  SCHVWDFDEISCAHALAVL

A0A5D3DAW8 Protein FAR1-RELATED SEQUENCE 4-like1.7e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

A0A5D3DJR8 MuDR family transposase1.7e-3461.98Show/hide
Query:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC
        R++MM  N SESL ++L E RD PVA LLDSIR +LQ WFY+R  VA  M++ LT+WAE ELRI+H  SRSF V+ I++V+F+VID    FIV+LD K C
Subjt:  RHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLC

Query:  SCHVWDFDEISCAHALAVLRG
        +C VWD DEI CAHALAVLRG
Subjt:  SCHVWDFDEISCAHALAVLRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGTTCTTGAGGCACTAAGCAGAAAAGATGCGCTCGCATCTAGGGTGCAAATGCAGGTTCAGACTTGTACTTTAGCTGCATATCCATCTAAGCTGAGAGGCAAAAG
ATCAACACGATGGGATCTTGAGTTGAAGCAAACGCTCGAGCAAAAGGACTGGAATCAAGTGGTGGCCGACACAATATGTCTAGCAAAAGCCAAGGCCACCCAGATCAAAG
AGGAAATAAGGACTGAAGAAAGAAGAAGGAAGAAAAAGGCCAAGAATGGGACCGAGAAGAAACAAAGAGAAGAAGAAGAACAAGCTGCTTTGGATTTTGTAGCTTCTTGG
GATTATGCATCCGCAAATGTGGTGCAAACAGAGAAAGAACCAGAGATTGCACCAGTTCCTGACGTGCAATCTAATGTGCAAATCCCACCACTACCAAAAGAGGAAGAAAA
TGTGCTCGAGGACCTGTTTGAGCACCAAAATGAGGCAATGTTCGAGGACGTGTTCGAACATGAGAAAGAAAAGGAGCAGCAAGCTCCAACTAATGAAGATGAGGTCAAGA
GATTTCTCGGGACCAAATGCCCAGGAGGGGCAGAGAAGGAACTGACAGTATGGTGGGATCGACTGTGCAAGGAGTCGAAAGCGGCTTCAATCCCTCTGGTAAAGGCAAAG
AATTTGTCTAGACATCGAATGATGAAACCAAATGCTTCAGAAAGTTTAACTTCGATTTTATTAGAGTGTAGAGATTTTCCTGTTGCAACGCTACTTGATTCTATTAGAGG
TTTATTGCAAAGGTGGTTTTATGAGCGAGGTAATGTAGCATCTCGTATGAAGTCTACTTTGACCACTTGGGCAGAGAGTGAGTTACGAATAGAACATGATAAATCAAGAA
GTTTTGTGGTTGATCCTATTAGTAATGTACAATTCAAAGTAATTGACAGAGATAACTATTTTATTGTAAAGCTGGATTTGAAATTATGTAGTTGTCATGTTTGGGATTTT
GATGAAATCTCCTGTGCTCATGCACTTGCTGTTCTTCGTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGTTCTTGAGGCACTAAGCAGAAAAGATGCGCTCGCATCTAGGGTGCAAATGCAGGTTCAGACTTGTACTTTAGCTGCATATCCATCTAAGCTGAGAGGCAAAAG
ATCAACACGATGGGATCTTGAGTTGAAGCAAACGCTCGAGCAAAAGGACTGGAATCAAGTGGTGGCCGACACAATATGTCTAGCAAAAGCCAAGGCCACCCAGATCAAAG
AGGAAATAAGGACTGAAGAAAGAAGAAGGAAGAAAAAGGCCAAGAATGGGACCGAGAAGAAACAAAGAGAAGAAGAAGAACAAGCTGCTTTGGATTTTGTAGCTTCTTGG
GATTATGCATCCGCAAATGTGGTGCAAACAGAGAAAGAACCAGAGATTGCACCAGTTCCTGACGTGCAATCTAATGTGCAAATCCCACCACTACCAAAAGAGGAAGAAAA
TGTGCTCGAGGACCTGTTTGAGCACCAAAATGAGGCAATGTTCGAGGACGTGTTCGAACATGAGAAAGAAAAGGAGCAGCAAGCTCCAACTAATGAAGATGAGGTCAAGA
GATTTCTCGGGACCAAATGCCCAGGAGGGGCAGAGAAGGAACTGACAGTATGGTGGGATCGACTGTGCAAGGAGTCGAAAGCGGCTTCAATCCCTCTGGTAAAGGCAAAG
AATTTGTCTAGACATCGAATGATGAAACCAAATGCTTCAGAAAGTTTAACTTCGATTTTATTAGAGTGTAGAGATTTTCCTGTTGCAACGCTACTTGATTCTATTAGAGG
TTTATTGCAAAGGTGGTTTTATGAGCGAGGTAATGTAGCATCTCGTATGAAGTCTACTTTGACCACTTGGGCAGAGAGTGAGTTACGAATAGAACATGATAAATCAAGAA
GTTTTGTGGTTGATCCTATTAGTAATGTACAATTCAAAGTAATTGACAGAGATAACTATTTTATTGTAAAGCTGGATTTGAAATTATGTAGTTGTCATGTTTGGGATTTT
GATGAAATCTCCTGTGCTCATGCACTTGCTGTTCTTCGTGGGTAG
Protein sequenceShow/hide protein sequence
MPVLEALSRKDALASRVQMQVQTCTLAAYPSKLRGKRSTRWDLELKQTLEQKDWNQVVADTICLAKAKATQIKEEIRTEERRRKKKAKNGTEKKQREEEEQAALDFVASW
DYASANVVQTEKEPEIAPVPDVQSNVQIPPLPKEEENVLEDLFEHQNEAMFEDVFEHEKEKEQQAPTNEDEVKRFLGTKCPGGAEKELTVWWDRLCKESKAASIPLVKAK
NLSRHRMMKPNASESLTSILLECRDFPVATLLDSIRGLLQRWFYERGNVASRMKSTLTTWAESELRIEHDKSRSFVVDPISNVQFKVIDRDNYFIVKLDLKLCSCHVWDF
DEISCAHALAVLRG