; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023423 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023423
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold13:4603202..4603959
RNA-Seq ExpressionSpg023423
SyntenySpg023423
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040038.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-2955.74Show/hide
Query:  SISVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSY
        S+S+N  + D   SS    +WWLS+IYGP   + RK FW EL DL   C+  WLL GDFNV R+SSE+S  NP+K SM+ FN FI   NLIDPPL N  +
Subjt:  SISVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSY

Query:  TWSNMRQNPVMSRLDRFLYSQN
        TWSN+R  PV+SR+DRFLY+ N
Subjt:  TWSNMRQNPVMSRLDRFLYSQN

KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]1.8e-3345.76Show/hide
Query:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMC----SISVNWVSLDSVG---------SSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC
        ++FKR+L  WL ENN  L    +   N  T     ++     ++ V  VS D +           S +G SWWLS+IYGP KRK R  FW+EL +L  +C
Subjt:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMC----SISVNWVSLDSVG---------SSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC

Query:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI
           W+LGGDFNV RW  E+S  NPA  SMK FN+FI   NLIDPPL N  +TWSN+R    +SRLDRFL+S +   I
Subjt:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.5e-3160.38Show/hide
Query:  SGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRL
        S +G SWWLS+IYGP KRK R  FW+EL +L  +C   W+LGGDFNV RW  E+S  NPA  SMK FN+FI   NLIDPPL N  +TWSN+R    +SRL
Subjt:  SGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRL

Query:  DRFLYS
        DRFL+S
Subjt:  DRFLYS

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.8e-3446.43Show/hide
Query:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMCSI----SVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGD
        ++FKR+L  WL ENN  L      +    ++T    +  +    +V   S+     S +G SWWLS+IYGP KRK R  FW+EL +L  +C   W+LGGD
Subjt:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMCSI----SVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGD

Query:  FNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI
        FNV RW  E+S  NPA  SMK FN+FI   NLIDPPL N  +TWSN+R    +SRLDRFL+S +   I
Subjt:  FNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]3.1e-3345.93Show/hide
Query:  LIPTKSISENVETITGQAAMCSISVNWVSLDSVGSSG------------------------------DGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC
        L  TKS S N + I  ++   SIS+ W SLD+ G+SG                              D F+WWL+ +Y PVK+KKRK FWQEL+DL GLC
Subjt:  LIPTKSISENVETITGQAAMCSISVNWVSLDSVGSSG------------------------------DGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC

Query:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQ
           WLLG DFN++RWS E+S  NP +  M  FN FI    LIDP + NG YTWSN+R + V+SR++RFLYS+
Subjt:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQ

TrEMBL top hitse value%identityAlignment
A0A5A7TAQ1 LINE-1 retrotransposable element ORF2 protein5.9e-3055.74Show/hide
Query:  SISVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSY
        S+S+N  + D   SS    +WWLS+IYGP   + RK FW EL DL   C+  WLL GDFNV R+SSE+S  NP+K SM+ FN FI   NLIDPPL N  +
Subjt:  SISVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSY

Query:  TWSNMRQNPVMSRLDRFLYSQN
        TWSN+R  PV+SR+DRFLY+ N
Subjt:  TWSNMRQNPVMSRLDRFLYSQN

A0A5A7TTA1 DUF4283 domain-containing protein8.9e-3445.76Show/hide
Query:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMC----SISVNWVSLDSVG---------SSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC
        ++FKR+L  WL ENN  L    +   N  T     ++     ++ V  VS D +           S +G SWWLS+IYGP KRK R  FW+EL +L  +C
Subjt:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMC----SISVNWVSLDSVG---------SSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC

Query:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI
           W+LGGDFNV RW  E+S  NPA  SMK FN+FI   NLIDPPL N  +TWSN+R    +SRLDRFL+S +   I
Subjt:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein4.1e-3160.38Show/hide
Query:  SGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRL
        S +G SWWLS+IYGP KRK R  FW+EL +L  +C   W+LGGDFNV RW  E+S  NPA  SMK FN+FI   NLIDPPL N  +TWSN+R    +SRL
Subjt:  SGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRL

Query:  DRFLYS
        DRFL+S
Subjt:  DRFLYS

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein2.3e-3446.43Show/hide
Query:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMCSI----SVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGD
        ++FKR+L  WL ENN  L      +    ++T    +  +    +V   S+     S +G SWWLS+IYGP KRK R  FW+EL +L  +C   W+LGGD
Subjt:  MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMCSI----SVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGD

Query:  FNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI
        FNV RW  E+S  NPA  SMK FN+FI   NLIDPPL N  +TWSN+R    +SRLDRFL+S +   I
Subjt:  FNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQI

A0A6J1CVN2 uncharacterized protein LOC1110146571.5e-3345.93Show/hide
Query:  LIPTKSISENVETITGQAAMCSISVNWVSLDSVGSSG------------------------------DGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC
        L  TKS S N + I  ++   SIS+ W SLD+ G+SG                              D F+WWL+ +Y PVK+KKRK FWQEL+DL GLC
Subjt:  LIPTKSISENVETITGQAAMCSISVNWVSLDSVGSSG------------------------------DGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLC

Query:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQ
           WLLG DFN++RWS E+S  NP +  M  FN FI    LIDP + NG YTWSN+R + V+SR++RFLYS+
Subjt:  NDFWLLGGDFNVFRWSSESSFPNPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G40390.1 DNAse I-like superfamily protein9.1e-0734.44Show/hide
Query:  KRKDFWQELYDLGG---LCNDFWLLGGDFNVFRWSSE--SSFP-NPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQ-NPVMSRLDR
        +R+  W ++  L     LCN  WL+ GDFN     +E  S  P N + + +++  + +R  +L+D P     YTWSN +Q NP++ +LDR
Subjt:  KRKDFWQELYDLGG---LCNDFWLLGGDFNVFRWSSE--SSFP-NPAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQ-NPVMSRLDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCAAGCGCAGACTGAACAAATGGCTTATTGAGAACAACTTTTGCTTGATCCCAACAAAATCTATTTCTGAGAATGTTGAAACTATAACAGGCCAAGCGGCCAT
GTGCTCTATTAGCGTTAATTGGGTCTCTCTAGATTCGGTAGGCTCTTCTGGAGATGGTTTTTCATGGTGGCTTTCCAGTATCTATGGTCCTGTAAAAAGAAAGAAAAGGA
AAGATTTTTGGCAGGAGCTCTACGATCTAGGGGGCCTTTGCAATGACTTTTGGCTTCTTGGGGGCGATTTCAATGTTTTCAGATGGAGTAGTGAATCCTCTTTTCCTAAT
CCGGCAAAACGGAGTATGAAGAATTTTAATTCTTTTATCAGGCTCATGAATCTCATTGATCCCCCTCTTGTTAACGGCTCCTACACTTGGTCCAACATGAGGCAAAATCC
AGTCATGTCCAGATTGGATAGATTTCTGTATTCTCAAAATTTGCCCCAAATTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCAAGCGCAGACTGAACAAATGGCTTATTGAGAACAACTTTTGCTTGATCCCAACAAAATCTATTTCTGAGAATGTTGAAACTATAACAGGCCAAGCGGCCAT
GTGCTCTATTAGCGTTAATTGGGTCTCTCTAGATTCGGTAGGCTCTTCTGGAGATGGTTTTTCATGGTGGCTTTCCAGTATCTATGGTCCTGTAAAAAGAAAGAAAAGGA
AAGATTTTTGGCAGGAGCTCTACGATCTAGGGGGCCTTTGCAATGACTTTTGGCTTCTTGGGGGCGATTTCAATGTTTTCAGATGGAGTAGTGAATCCTCTTTTCCTAAT
CCGGCAAAACGGAGTATGAAGAATTTTAATTCTTTTATCAGGCTCATGAATCTCATTGATCCCCCTCTTGTTAACGGCTCCTACACTTGGTCCAACATGAGGCAAAATCC
AGTCATGTCCAGATTGGATAGATTTCTGTATTCTCAAAATTTGCCCCAAATTCAATGA
Protein sequenceShow/hide protein sequence
MAFKRRLNKWLIENNFCLIPTKSISENVETITGQAAMCSISVNWVSLDSVGSSGDGFSWWLSSIYGPVKRKKRKDFWQELYDLGGLCNDFWLLGGDFNVFRWSSESSFPN
PAKRSMKNFNSFIRLMNLIDPPLVNGSYTWSNMRQNPVMSRLDRFLYSQNLPQIQ