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Spg023458 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023458
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:11140281..11141691
RNA-Seq ExpressionSpg023458
SyntenySpg023458
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]4.5e-1146Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSFSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++F++  +                              G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSFSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-1553.92Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++ S+    + E   V +        EDDV WLHA+FR K AGGPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD

Query:  VL
        V+
Subjt:  VL

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]9.0e-1254.95Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES R++  S         +  DDV WLHAIFR K AGGPGGD+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]2.0e-1152.75Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++  S         +  DDV WLH++FR K A GPGG V
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.1e-1553.92Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++ S+    + E   V +        EDDV WLHA+FR K AGGPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD

Query:  VL
        V+
Subjt:  VL

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.2e-1146Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSFSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++F++  +                              G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSFSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG

A0A5A7VMG9 Reverse transcriptase2.5e-1553.92Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++ S+    + E   V +        EDDV WLHA+FR K AGGPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD

Query:  VL
        V+
Subjt:  VL

A0A5D3BP54 Gag/pol protein4.4e-1254.95Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES R++  S         +  DDV WLHAIFR K AGGPGGD+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV

A0A5D3CU23 Retrotrans_gag domain-containing protein9.8e-1252.75Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++  S         +  DDV WLH++FR K A GPGG V
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDV

A0A5D3DX39 Reverse transcriptase2.5e-1553.92Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++ S+    + E   V +        EDDV WLHA+FR K AGGPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSFSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGGD

Query:  VL
        V+
Subjt:  VL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGA
ACAAGCTTCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCG
GGAGGGGACGTATTGATCCAGAGCGTCCATGTAGTAGACATGCAAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGA
ACAAGCTTCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCG
GGAGGGGACGTATTGATCCAGAGCGTCCATGTAGTAGACATGCAAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGAACCATGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSFSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGDVLIQSVHVVDMQAGVSYAMSLHKTEP