; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023614 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023614
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:7279795..7288157
RNA-Seq ExpressionSpg023614
SyntenySpg023614
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0755499.1 hypothetical protein [Gossypium gossypioides]3.2e-1428.26Show/hide
Query:  LLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAILWSMWNNRNKEAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDA--TLANGDMRSD
        L+ ++I  + F   ++ +    ++V + +++ TF+   WS  +     A++  H   R           S+  W+PPPQ  FK+NVDA  ++AN  + +D
Subjt:  LLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAILWSMWNNRNKEAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDA--TLANGDMRSD

Query:  MIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAA
         IIRN +   M S         SV   EA  ++  +Q A++ G S + +E D ++V N +      Y+E  P    +K L    H   F    REGN AA
Subjt:  MIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAA

Query:  HQLAIHARTSKPSEVWVEDHLLGLTTLINS
        H L +    ++    WVED  L +  + +S
Subjt:  HQLAIHARTSKPSEVWVEDHLLGLTTLINS

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]7.9e-1330.63Show/hide
Query:  DDLTTFVAILWSMWNNRNKEAQAKHHG-----------DYRDRERSR----------DADDSSLTVWTPPPQHHFKLNVDATLANGDMRS--DMIIRNSK
        ++L+ F   LW++WN RN+      HG           DY    +S           D     ++ W PP    FK+NVDA    G+  +  D++IR+S 
Subjt:  DDLTTFVAILWSMWNNRNKEAQAKHHG-----------DYRDRERSR----------DADDSSLTVWTPPPQHHFKLNVDATLANGDMRS--DMIIRNSK

Query:  RDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHI-RGFLLTKREGNKAAHQLAIH
         + + S   F      V   E     + + LA+E+GL P  IE D   V+NLL       +EI  L   ++ +    HI  GF    REGN  AH LA  
Subjt:  RDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHI-RGFLLTKREGNKAAHQLAIH

Query:  ARTSKPSEVWVEDHLLGLTTLI
           S+   VWVE+ L  L+ +I
Subjt:  ARTSKPSEVWVEDHLLGLTTLI

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.0e-1230.91Show/hide
Query:  VWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAP
        +W PP +  +K+N DA+    D  + +  IIRN +   MAS   +     SV+  EA   V+ +QLA + G++P+ +E D   ++NL        +E   
Subjt:  VWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAP

Query:  LIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVEDHLLGLTTLINSLVLVPLI
        ++   K     +    F   KREGNKAAH LA  A   +   +W+ED  L L + +    L  L+
Subjt:  LIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVEDHLLGLTTLINSLVLVPLI

XP_030940121.1 uncharacterized protein LOC115965055 [Quercus lobata]6.7e-1229.86Show/hide
Query:  EVLTSDDLTTFVAILWSMWNNRNK--------------EAQAKHHGDYRDRERSRDADDSS-LTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKR
        E   + DL  FV   W +WNNRN               EA   +  +++    S +A  S  LT+W PPP   +K NVD  +          +++RN K 
Subjt:  EVLTSDDLTTFVAILWSMWNNRNK--------------EAQAKHHGDYRDRERSRDADDSS-LTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKR

Query:  DSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHAR
          M ++            VEA+     I  + E GL  I +E D + V N +  HD    +I  L+  +K             T+REGNKAAH +A HA+
Subjt:  DSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHAR

Query:  TSKPSEVWVED
              +WVED
Subjt:  TSKPSEVWVED

XP_030949032.1 uncharacterized protein LOC115972957 [Quercus lobata]2.3e-1227.46Show/hide
Query:  DKIELVVKGGRWRVGNEETIDIYDDQWISRPKTFRMMWTKSKMFQLLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAIL----------------W
        D  E++ +G RW +GN     I+ D+WI    +F +   K + F+     ++TL   +  + E  + Q+ L      + V I+                W
Subjt:  DKIELVVKGGRWRVGNEETIDIYDDQWISRPKTFRMMWTKSKMFQLLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAIL----------------W

Query:  SMWNNRN------KEAQAKH--------HGDYRDR-ERSRDADDSSLTVWTPPPQHHFKLNVDATLAN--GDMRSDMIIRNSKRDSMASVEYFRRTSCSV
         +W NRN      K  QAK           D++ + E SR    S +  W+PP +  FK+NVD  L    G     ++IRN +   M ++          
Subjt:  SMWNNRN------KEAQAKH--------HGDYRDR-ERSRDADDSSLTVWTPPPQHHFKLNVDATLAN--GDMRSDMIIRNSKRDSMASVEYFRRTSCSV

Query:  EWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVED
          VEA+   + IQLA + GL  I +E D K+V + L    +    I  +I   ++ +++ H        R GN AAH +A +A+    S VWVED
Subjt:  EWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVED

TrEMBL top hitse value%identityAlignment
A0A2N9EHR8 F-box domain-containing protein2.3e-1029.05Show/hide
Query:  TSDDLTTFVAILWSMWNNRNK------------------EAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKR
        TS +  TF  + WS+W +RNK                  E  A+ +  ++ +   +   +S    W PP     K+N D  +     +    +IIRNS  
Subjt:  TSDDLTTFVAILWSMWNNRNK------------------EAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKR

Query:  DSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHAR
        + MA++        SV  VEA       QLA++ G+  + IE D   + + L D +        LI   KQL    +   F   KR+GN  AH LA  A+
Subjt:  DSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHAR

Query:  TSKPSEVWVE
        +SKP E+W+E
Subjt:  TSKPSEVWVE

A0A2N9EU90 Uncharacterized protein6.1e-1133.73Show/hide
Query:  SRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHD
        +R A       W+PP    +K+N DA     + ++   +IIRN   + MAS+ +      SVE +EA      IQ+A++ GL  I IE D + V + L +
Subjt:  SRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHD

Query:  HDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVEDHLLGLTTLI
        H   +     LI+     T   H   FL  KR+GN  AH +A  A+ S+P EVW+E     L T+I
Subjt:  HDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVEDHLLGLTTLI

A0A2N9F767 Uncharacterized protein6.8e-1028.57Show/hide
Query:  TSDDLTTFVAILWSMWNNRNK------------------EAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKR
        TS +  +F  + WS+W +RNK                  E  A+++  +  +   + +  SS   W PP     K+N D  +     +    +IIRNS  
Subjt:  TSDDLTTFVAILWSMWNNRNK------------------EAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDATL--ANGDMRSDMIIRNSKR

Query:  DSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHAR
        + MA++        SV  VEA       QLA++ G+  + IE D   + + L D +        LI   K L    +   F   KR+GN  AH LA  A+
Subjt:  DSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHAR

Query:  TSKPSEVWVE
        +SKP E+W+E
Subjt:  TSKPSEVWVE

A0A2N9H1N4 RNase H domain-containing protein2.1e-1130.28Show/hide
Query:  KTFRMMWTKSKMFQLLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAILWSMWNNRNK-EAQAKHHGDYRDRERSRDA-----------------DD
        K  + +W      Q L  +  T   D++ K  S     +L++ +L  F  I WS+W  RN+   Q     D +  +R+RD+                   
Subjt:  KTFRMMWTKSKMFQLLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAILWSMWNNRNK-EAQAKHHGDYRDRERSRDA-----------------DD

Query:  SSLTV-WTPPPQHHFKLNVDATLANGDMRS--DMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYY
        SS TV W PP Q  +K+N D  + +    +   +IIRN + + M S+        SVE VEA      IQ A + G + I +E D K V   L   +   
Subjt:  SSLTV-WTPPPQHHFKLNVDATLANGDMRS--DMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYY

Query:  NEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVE
             +I   KQ+        FL T REGN  AH LA  AR +KP E W+E
Subjt:  NEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVE

A0A6J1CIF1 uncharacterized protein LOC1110112371.5e-1230.91Show/hide
Query:  VWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAP
        +W PP +  +K+N DA+    D  + +  IIRN +   MAS   +     SV+  EA   V+ +QLA + G++P+ +E D   ++NL        +E   
Subjt:  VWTPPPQHHFKLNVDATLANGDMRSDM--IIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAP

Query:  LIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVEDHLLGLTTLINSLVLVPLI
        ++   K     +    F   KREGNKAAH LA  A   +   +W+ED  L L + +    L  L+
Subjt:  LIHHLKQLTIDNHIRGFLLTKREGNKAAHQLAIHARTSKPSEVWVEDHLLGLTTLINSLVLVPLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCACCCACATCGTTCTTCAATATTTTCATATCTTGTTCAACCGACAACAAGTGTATGGTTGTTGATCGTGGTGAGAGGACGGTGGTAGGCTTCGCCTCTTTTCC
AACCGAAGATGAGTCTCCCATCACATTGGTTGAAACTCTCTTGGTTGCCATGAAGAAAGAGTCCAGAATCTTGTGCGGTGATATTCTTTCCTCTCTGCGAACAATGGGAA
TGCCCCATGAGCTAAATGTGGTTCCTGCCCTTGTCTCTGCCTCGATGAGACGGCAACAAAACACACGGCACTCGGAGCAGGAACACAGACGACAGAAACCTAGGCAGCGC
TCGGAGGATGAGACAGCGGGAATAGAGCGGCGCGCGGTCGGAGGATGGACGACGAAACACAGAGGGAGTGAGCGTGAATGGTCGGCTAAGCGTGAAGCAGAAAAGTCGAG
GGAGGGGGGAGACGGGCGTGAAGAAACGACTATGAGATTATATTTGGGAGATATATTTTTGGGGTTTGAAAATAAAATATTGAGGGATTCGAGGAGTTATTTGGAGGGAG
GATATGAAAAGATTTTTGCAGCAACTAATTATTACGATAAGATAGAGCTAGTTGTGAAGGGAGGACGGTGGAGAGTTGGAAATGAAGAGACAATTGACATTTATGATGAT
CAGTGGATCTCGAGACCGAAAACATTCAGGATGATGTGGACAAAATCCAAGATGTTCCAATTGCTGGAGATAGCCATTCAGACACTTTCTTTTGACATTATGACAAAACA
AGAAAGTACTCAGGGGCAGGAGGTTCTTACTTCTGATGATTTGACAACCTTTGTGGCTATCCTATGGTCTATGTGGAATAACAGAAATAAAGAGGCCCAAGCTAAGCATC
ATGGAGACTATCGAGATCGAGAGCGGTCGAGAGATGCTGATGACTCAAGCCTAACTGTGTGGACTCCACCACCCCAACACCATTTCAAGTTGAATGTGGATGCAACACTA
GCAAATGGAGATATGAGGTCAGACATGATTATCAGAAATTCAAAGAGAGATTCAATGGCAAGTGTAGAATATTTCAGGAGAACGAGTTGCTCAGTGGAGTGGGTAGAAGC
ACAGACTCTTGTTGACGACATTCAGCTAGCGATGGAGTCGGGATTATCACCAATATGGATAGAGATGGATTTCAAAATTGTATGGAATCTACTTCATGACCACGACAATT
ATTATAATGAGATTGCTCCCCTAATTCACCATCTCAAGCAATTGACCATTGATAATCACATCAGAGGTTTTTTACTGACAAAAAGGGAAGGCAACAAAGCGGCGCACCAG
CTGGCTATTCATGCTCGCACATCAAAACCTTCAGAAGTTTGGGTAGAAGATCATCTTCTTGGGTTAACAACATTAATCAACTCTCTGGTTTTAGTTCCTTTGATTGACTA
A
mRNA sequenceShow/hide mRNA sequence
ATGATCTCACCCACATCGTTCTTCAATATTTTCATATCTTGTTCAACCGACAACAAGTGTATGGTTGTTGATCGTGGTGAGAGGACGGTGGTAGGCTTCGCCTCTTTTCC
AACCGAAGATGAGTCTCCCATCACATTGGTTGAAACTCTCTTGGTTGCCATGAAGAAAGAGTCCAGAATCTTGTGCGGTGATATTCTTTCCTCTCTGCGAACAATGGGAA
TGCCCCATGAGCTAAATGTGGTTCCTGCCCTTGTCTCTGCCTCGATGAGACGGCAACAAAACACACGGCACTCGGAGCAGGAACACAGACGACAGAAACCTAGGCAGCGC
TCGGAGGATGAGACAGCGGGAATAGAGCGGCGCGCGGTCGGAGGATGGACGACGAAACACAGAGGGAGTGAGCGTGAATGGTCGGCTAAGCGTGAAGCAGAAAAGTCGAG
GGAGGGGGGAGACGGGCGTGAAGAAACGACTATGAGATTATATTTGGGAGATATATTTTTGGGGTTTGAAAATAAAATATTGAGGGATTCGAGGAGTTATTTGGAGGGAG
GATATGAAAAGATTTTTGCAGCAACTAATTATTACGATAAGATAGAGCTAGTTGTGAAGGGAGGACGGTGGAGAGTTGGAAATGAAGAGACAATTGACATTTATGATGAT
CAGTGGATCTCGAGACCGAAAACATTCAGGATGATGTGGACAAAATCCAAGATGTTCCAATTGCTGGAGATAGCCATTCAGACACTTTCTTTTGACATTATGACAAAACA
AGAAAGTACTCAGGGGCAGGAGGTTCTTACTTCTGATGATTTGACAACCTTTGTGGCTATCCTATGGTCTATGTGGAATAACAGAAATAAAGAGGCCCAAGCTAAGCATC
ATGGAGACTATCGAGATCGAGAGCGGTCGAGAGATGCTGATGACTCAAGCCTAACTGTGTGGACTCCACCACCCCAACACCATTTCAAGTTGAATGTGGATGCAACACTA
GCAAATGGAGATATGAGGTCAGACATGATTATCAGAAATTCAAAGAGAGATTCAATGGCAAGTGTAGAATATTTCAGGAGAACGAGTTGCTCAGTGGAGTGGGTAGAAGC
ACAGACTCTTGTTGACGACATTCAGCTAGCGATGGAGTCGGGATTATCACCAATATGGATAGAGATGGATTTCAAAATTGTATGGAATCTACTTCATGACCACGACAATT
ATTATAATGAGATTGCTCCCCTAATTCACCATCTCAAGCAATTGACCATTGATAATCACATCAGAGGTTTTTTACTGACAAAAAGGGAAGGCAACAAAGCGGCGCACCAG
CTGGCTATTCATGCTCGCACATCAAAACCTTCAGAAGTTTGGGTAGAAGATCATCTTCTTGGGTTAACAACATTAATCAACTCTCTGGTTTTAGTTCCTTTGATTGACTA
A
Protein sequenceShow/hide protein sequence
MISPTSFFNIFISCSTDNKCMVVDRGERTVVGFASFPTEDESPITLVETLLVAMKKESRILCGDILSSLRTMGMPHELNVVPALVSASMRRQQNTRHSEQEHRRQKPRQR
SEDETAGIERRAVGGWTTKHRGSEREWSAKREAEKSREGGDGREETTMRLYLGDIFLGFENKILRDSRSYLEGGYEKIFAATNYYDKIELVVKGGRWRVGNEETIDIYDD
QWISRPKTFRMMWTKSKMFQLLEIAIQTLSFDIMTKQESTQGQEVLTSDDLTTFVAILWSMWNNRNKEAQAKHHGDYRDRERSRDADDSSLTVWTPPPQHHFKLNVDATL
ANGDMRSDMIIRNSKRDSMASVEYFRRTSCSVEWVEAQTLVDDIQLAMESGLSPIWIEMDFKIVWNLLHDHDNYYNEIAPLIHHLKQLTIDNHIRGFLLTKREGNKAAHQ
LAIHARTSKPSEVWVEDHLLGLTTLINSLVLVPLID