; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023653 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023653
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:10224015..10224954
RNA-Seq ExpressionSpg023653
SyntenySpg023653
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]1.3e-0833.09Show/hide
Query:  AWRIMSHGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWV
        +WR + +G L    K+N D +W  + +  GVGW++ DS G  +  G     R  S  A+E  AIR+ L A + S      ++ VESDS  ++R L  EW 
Subjt:  AWRIMSHGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWV

Query:  DASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAHVLT
             + ++ DI++L        F+  PR  NK AH +T
Subjt:  DASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAHVLT

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]3.0e-0835.34Show/hide
Query:  KINVDVSWNKEL-KRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSF--RVIVESDSTDVVRALNHEWVDASKSKLVMDDI
        K+N   SW++E  K GV W+I DSLGS + +   +++R W +K LE  A+ +GL  YL  +   S+  R I+     ++ R LN+  +D  +   V+D+I
Subjt:  KINVDVSWNKEL-KRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSF--RVIVESDSTDVVRALNHEWVDASKSKLVMDDI

Query:  EELAALVGVIAFVKCP
         +L  L G+I+F + P
Subjt:  EELAALVGVIAFVKCP

XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]3.0e-0831.5Show/hide
Query:  PLINCVKINVDVSWNKELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKLVM
        P +  +K+NVD  +  EL  G+G ++ D +G  + VG  +I+ +W ++  E  AI  GL             ++VESD   V++AL ++  D S+  L++
Subjt:  PLINCVKINVDVSWNKELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKLVM

Query:  DDIEELAALVGVIAFVKCPRASNKVAH
        DDI  L +    + +    R  NKVAH
Subjt:  DDIEELAALVGVIAFVKCPRASNKVAH

XP_028948099.1 uncharacterized protein LOC114820925 [Malus domestica]2.7e-0933.33Show/hide
Query:  RIMSHGPLINCVKINVDVSWNKELK-RGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSS-KREPSFRVIVESDSTDVVRALNHEWVD
        R+    P    +K+N D +W KE K  GVGW++ D  G P  V     QR  +   +E  AIR+GL+  +SS   EP   ++V SDS  +++ +N E + 
Subjt:  RIMSHGPLINCVKINVDVSWNKELK-RGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSS-KREPSFRVIVESDSTDVVRALNHEWVD

Query:  ASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAH
             + + DI  +A L  ++ F   PR  N+ AH
Subjt:  ASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAH

XP_028960018.1 uncharacterized protein LOC114825459 [Malus domestica]2.9e-1134.81Show/hide
Query:  HGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGL-DAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKS
        H P    +KIN D +W+K  ++ G+GW+ CD  G   G G +   R  S  A E  AIR+ L D  L   R     VI+ESD+  +V+ + +E     + 
Subjt:  HGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGL-DAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKS

Query:  KLVMDDIEELAALVGVIAFVKCPRASNKVAHVLTR
        + ++ DIE LA  +  + F+   R SNK AH++T+
Subjt:  KLVMDDIEELAALVGVIAFVKCPRASNKVAHVLTR

TrEMBL top hitse value%identityAlignment
A0A6J5UAY2 Reverse transcriptase domain-containing protein2.1e-0733.09Show/hide
Query:  AWRIMSHGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWV
        +WR   +G L    K+N D +W  + +  GVGW++ DS G  +  G     R  S  A+E  AIR+ L A + S      ++ VESDS  V+R +  EW 
Subjt:  AWRIMSHGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWV

Query:  DASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAH
               ++ DI++L        F+  PR  NK AH
Subjt:  DASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAH

A0A6J5UV01 Reverse transcriptase domain-containing protein6.5e-0933.09Show/hide
Query:  AWRIMSHGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWV
        +WR + +G L    K+N D +W  + +  GVGW++ DS G  +  G     R  S  A+E  AIR+ L A + S      ++ VESDS  ++R L  EW 
Subjt:  AWRIMSHGPLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWV

Query:  DASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAHVLT
             + ++ DI++L        F+  PR  NK AH +T
Subjt:  DASKSKLVMDDIEELAALVGVIAFVKCPRASNKVAHVLT

A0A6P5S2T0 uncharacterized protein LOC1107519133.2e-0835Show/hide
Query:  PLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKLV
        P  + +K+N DV+W  +L R GVGW+I DS G  +  G     R  S   +E LAIR  L A    +      V+VESD+   +  LN +    S  + +
Subjt:  PLINCVKINVDVSWNKELKR-GVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKLV

Query:  MDDIEELAALVGVIAFVKCPRASNKVAHVLTRATVGFRSK
        + DI++L A    ++FV  P++ N+VAH +     GF SK
Subjt:  MDDIEELAALVGVIAFVKCPRASNKVAHVLTRATVGFRSK

A0A803L9N8 Uncharacterized protein2.3e-0627.15Show/hide
Query:  PLINCVKINVDVSWNKELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVI-VESDSTDVVRALNHEWVDASKSKLV
        P  +  K+N D S +K+ + G+G ++ D++G  M      +     I  +E +A+  G+ A      +  FR + V SD   V+  LN    + S ++L+
Subjt:  PLINCVKINVDVSWNKELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVI-VESDSTDVVRALNHEWVDASKSKLV

Query:  MDDIEELAALVGVIAFVKCPRASNKVAHVLTRATVG-----FRSKEVPSSI
        + DI   A     + F  CPR  NKVAH +   ++      F  ++ P+S+
Subjt:  MDDIEELAALVGVIAFVKCPRASNKVAHVLTRATVG-----FRSKEVPSSI

M7ZXZ0 Laccase4.6e-0732.09Show/hide
Query:  PLINCVKINVDVSWN-KELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKLV
        P  + VK+NVD S++  +L+  VG ++ D  G  +     +++    ++  E  A+R G+   L ++R    ++IVESD  +V+  +N+    AS S  +
Subjt:  PLINCVKINVDVSWN-KELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKLV

Query:  MDDIEELAALVGV--IAFVKCPRASNKVAHVLTR
          D   L  ++G   ++FV CPR +N VAHVL R
Subjt:  MDDIEELAALVGV--IAFVKCPRASNKVAHVLTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATGGATAGCTTGGAGAATCATGAGTCATGGACCCCTGATCAACTGCGTGAAAATCAACGTTGATGTTTCATGGAACAAGGAGCTGAAAAGAGGAGTGGGTTGGAT
TATCTGTGATTCTCTCGGATCTCCGATGGGAGTTGGCTACGCTAAAATCCAGAGAAATTGGTCGATCAAAGCCCTTGAGACGTTAGCGATTAGGAAAGGGTTAGATGCGT
ACCTTTCCTCCAAGCGTGAGCCGTCCTTCCGAGTCATTGTCGAATCAGACTCGACGGACGTGGTGAGGGCTCTGAACCATGAATGGGTTGATGCATCGAAGTCGAAGCTG
GTGATGGATGATATCGAAGAGCTAGCTGCTCTGGTTGGTGTGATTGCGTTCGTAAAATGCCCTCGAGCAAGCAACAAAGTCGCACATGTCCTCACGCGAGCTACTGTTGG
ATTTCGATCCAAGGAAGTCCCGTCTTCCATTGTTGTAGACGGTTTTTTTGTGCTCGTTCCATCTTCCACGTTGGAAGATAATTCGTTTGGTTGGGAAGGGAAAATCCCTT
TTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATGGATAGCTTGGAGAATCATGAGTCATGGACCCCTGATCAACTGCGTGAAAATCAACGTTGATGTTTCATGGAACAAGGAGCTGAAAAGAGGAGTGGGTTGGAT
TATCTGTGATTCTCTCGGATCTCCGATGGGAGTTGGCTACGCTAAAATCCAGAGAAATTGGTCGATCAAAGCCCTTGAGACGTTAGCGATTAGGAAAGGGTTAGATGCGT
ACCTTTCCTCCAAGCGTGAGCCGTCCTTCCGAGTCATTGTCGAATCAGACTCGACGGACGTGGTGAGGGCTCTGAACCATGAATGGGTTGATGCATCGAAGTCGAAGCTG
GTGATGGATGATATCGAAGAGCTAGCTGCTCTGGTTGGTGTGATTGCGTTCGTAAAATGCCCTCGAGCAAGCAACAAAGTCGCACATGTCCTCACGCGAGCTACTGTTGG
ATTTCGATCCAAGGAAGTCCCGTCTTCCATTGTTGTAGACGGTTTTTTTGTGCTCGTTCCATCTTCCACGTTGGAAGATAATTCGTTTGGTTGGGAAGGGAAAATCCCTT
TTTGA
Protein sequenceShow/hide protein sequence
MAWIAWRIMSHGPLINCVKINVDVSWNKELKRGVGWIICDSLGSPMGVGYAKIQRNWSIKALETLAIRKGLDAYLSSKREPSFRVIVESDSTDVVRALNHEWVDASKSKL
VMDDIEELAALVGVIAFVKCPRASNKVAHVLTRATVGFRSKEVPSSIVVDGFFVLVPSSTLEDNSFGWEGKIPF