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Spg023662 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023662
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold13:8766686..8776013
RNA-Seq ExpressionSpg023662
SyntenySpg023662
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]1.3e-0447.95Show/hide
Query:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVP----PPRIDNDREDDYEDDGSDQPDDDQVTLVAVPR
        +REAQQG + RMI  +E L++R+ R E + + RER+P    PP + N  ++  E DGSD  DDDQVTL+  PR
Subjt:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVP----PPRIDNDREDDYEDDGSDQPDDDQVTLVAVPR

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]5.6e-0858.57Show/hide
Query:  REAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDR-EDDYEDDGSDQPDDDQVTLVAVPRG
        REA +GT+ERMIR +E L+ER+GRLE Q Q   RVPPP       ED+YE DGSD  +DDQ T++A PRG
Subjt:  REAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDR-EDDYEDDGSDQPDDDQVTLVAVPRG

XP_022971169.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita maxima]1.0e-0448.15Show/hide
Query:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD-QVTLVAVPRGRQRPRLLDTF
        +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+ QV  +   R R     +D++
Subjt:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD-QVTLVAVPRGRQRPRLLDTF

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]4.9e-0456.67Show/hide
Query:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD
        +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+
Subjt:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]4.9e-0456.67Show/hide
Query:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD
        +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+
Subjt:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD

TrEMBL top hitse value%identityAlignment
A0A0J8BAH8 Retrotrans_gag domain-containing protein2.4e-0429.5Show/hide
Query:  VKEVGL--LDNKLSILTSLCEQLVHGYQIKQPHQHYRPSNS--------------GKSLEDQIYELGKYTLQFQESTRVELKDMSNNIDKIETYVTKLEK
        VKE+G+  L+ +++ LTSL EQ V G    +  Q Y+P  S              G SLED +  +   TLQFQ+ TR  L+++ N + ++   V +L+ 
Subjt:  VKEVGL--LDNKLSILTSLCEQLVHGYQIKQPHQHYRPSNS--------------GKSLEDQIYELGKYTLQFQESTRVELKDMSNNIDKIETYVTKLEK

Query:  HVEQQAQLTQETILTTEVPFVAKVDDEEIECPLPSHDQS
        H   +     E         ++   D+E+E P+ + D+S
Subjt:  HVEQQAQLTQETILTTEVPFVAKVDDEEIECPLPSHDQS

A0A5A7TK52 Retrotrans_gag domain-containing protein6.3e-0547.95Show/hide
Query:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVP----PPRIDNDREDDYEDDGSDQPDDDQVTLVAVPR
        +REAQQG + RMI  +E L++R+ R E + + RER+P    PP + N  ++  E DGSD  DDDQVTL+  PR
Subjt:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVP----PPRIDNDREDDYEDDGSDQPDDDQVTLVAVPR

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241152.7e-0858.57Show/hide
Query:  REAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDR-EDDYEDDGSDQPDDDQVTLVAVPRG
        REA +GT+ERMIR +E L+ER+GRLE Q Q   RVPPP       ED+YE DGSD  +DDQ T++A PRG
Subjt:  REAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDR-EDDYEDDGSDQPDDDQVTLVAVPRG

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699484.8e-0548.15Show/hide
Query:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD-QVTLVAVPRGRQRPRLLDTF
        +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+ QV  +   R R     +D++
Subjt:  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD-QVTLVAVPRGRQRPRLLDTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAGGCACAACAAGGAACCATGGAAAGAATGATTCGTGGTATAGAAGAGTTGTCCGAACGCATGGGAAGGTTGGAGGCTCAGTACCAACCTCGTGAGAGAGTTCC
ACCACCACGTATTGACAATGATCGAGAGGATGACTATGAGGATGATGGTTCCGATCAACCAGATGATGACCAAGTTACCTTGGTAGCGGTTCCAAGAGGAAGACAAAGAC
CAAGGTTGTTAGATACATTTCCTGGGAGTTTCACAACATTTGGTATCAGAGCTGCTTTGATTCACAACATTTGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATA
TTTGATCGACAAGGTAATCCGGTTTTTACTTTCCTTGGGTTGATTTTCAAATCGGTTTTGGGGTTTTCAGATTTGAGATCTAAAGGTCCTCACCGGAGCTTTGGAAGCGA
TTCGAGACTTAAACGAGCGAAATCGGAGCGTAAAATGACCATTCTGCCCTTGGAGGCGTCACAGCGTCGAGACCCTTCAACCCAGGCGTCGGGACGCTGCTCAAATAAGG
AAAAGAACGTGGGCGTGAAGCGGAAGCAAGAGCGTCGCGATGCTACAGCCATAGCGTCGAGGGAAAGAGAAGCCCAATTAGTGAAGGAGGTAGGATTGCTCGATAATAAA
CTATCAATACTAACTTCTTTATGCGAGCAATTAGTGCATGGATATCAAATCAAACAACCACATCAGCACTATCGACCTTCCAATTCAGGTAAATCTCTTGAGGATCAAAT
TTATGAGCTTGGTAAATATACTCTTCAGTTTCAGGAAAGTACTCGAGTTGAGTTGAAAGACATGTCTAATAATATTGATAAGATAGAAACATATGTGACAAAACTGGAGA
AGCATGTAGAGCAACAAGCACAACTGACCCAAGAGACAATCCTTACAACAGAAGTTCCCTTTGTTGCAAAGGTTGATGATGAAGAAATTGAGTGTCCATTGCCATCTCAT
GATCAATCATGTGAGGACCCCCACACTAAATCTCTACAATTTTTGCCAATTGTGGAAGTTTTCATCTTTTCCAATCCAATGCTTAAACAGGGGAGGCGCCTAGTAATGTA
TTACTCGTTTGACTATTTTAATTACTTAATGGTTGGGTCCTTGGCCAGTCCTCATCGGAGCTTTGGAAGCGATTTGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGA
CCATTCTGCCCTTGGAGGCGTCACAGCGTCGAGACCCTTCAACCCAGGCGTCGGGACGCTGCTCAAATAAGGAAAAGAACGTGGGCGTGAAGCAGAAGAAAGAGCGTCGC
GACACTACAGCCATAGCGAATTCGACTATGGAAGTTGGAAGTCTGATCGACAAGGTGGAGCAAGTGGATTTAGATGAGGACTCAAATCAAACTTGGGCATGTTCGCTGAG
AGTTAAAGTGCAAATTGAGGACACACCATTAAAGAATGTGAGCAGTGCGGGGATACCGATGAAAATGATCTCCCTTACAGAACATGGTTACGCGAATTTTGGGAGGACGG
TCGAGGGGAAGGAGGAATTTCAAAGTCAGAACAACAAGGATCAATCGGAAAATAACATTATCTCACTGGCAAAAGGACAGTCAAGCAAGTTGAATCAGTCCGACAAGTTG
GAAGAACCAGTTTCGGCAAAGGGCCAAACAATCAAATCCACAAGCAAGGCAATTGAGAAAGATAAGGAATTAATTACCAAGATTGAAGGCGAAAATAGCGGTGCAACGAC
TCTTTTGGATCTAAAAAATGTGGAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAGGCACAACAAGGAACCATGGAAAGAATGATTCGTGGTATAGAAGAGTTGTCCGAACGCATGGGAAGGTTGGAGGCTCAGTACCAACCTCGTGAGAGAGTTCC
ACCACCACGTATTGACAATGATCGAGAGGATGACTATGAGGATGATGGTTCCGATCAACCAGATGATGACCAAGTTACCTTGGTAGCGGTTCCAAGAGGAAGACAAAGAC
CAAGGTTGTTAGATACATTTCCTGGGAGTTTCACAACATTTGGTATCAGAGCTGCTTTGATTCACAACATTTGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATA
TTTGATCGACAAGGTAATCCGGTTTTTACTTTCCTTGGGTTGATTTTCAAATCGGTTTTGGGGTTTTCAGATTTGAGATCTAAAGGTCCTCACCGGAGCTTTGGAAGCGA
TTCGAGACTTAAACGAGCGAAATCGGAGCGTAAAATGACCATTCTGCCCTTGGAGGCGTCACAGCGTCGAGACCCTTCAACCCAGGCGTCGGGACGCTGCTCAAATAAGG
AAAAGAACGTGGGCGTGAAGCGGAAGCAAGAGCGTCGCGATGCTACAGCCATAGCGTCGAGGGAAAGAGAAGCCCAATTAGTGAAGGAGGTAGGATTGCTCGATAATAAA
CTATCAATACTAACTTCTTTATGCGAGCAATTAGTGCATGGATATCAAATCAAACAACCACATCAGCACTATCGACCTTCCAATTCAGGTAAATCTCTTGAGGATCAAAT
TTATGAGCTTGGTAAATATACTCTTCAGTTTCAGGAAAGTACTCGAGTTGAGTTGAAAGACATGTCTAATAATATTGATAAGATAGAAACATATGTGACAAAACTGGAGA
AGCATGTAGAGCAACAAGCACAACTGACCCAAGAGACAATCCTTACAACAGAAGTTCCCTTTGTTGCAAAGGTTGATGATGAAGAAATTGAGTGTCCATTGCCATCTCAT
GATCAATCATGTGAGGACCCCCACACTAAATCTCTACAATTTTTGCCAATTGTGGAAGTTTTCATCTTTTCCAATCCAATGCTTAAACAGGGGAGGCGCCTAGTAATGTA
TTACTCGTTTGACTATTTTAATTACTTAATGGTTGGGTCCTTGGCCAGTCCTCATCGGAGCTTTGGAAGCGATTTGGGGCTTAAACGAGCGAAACCGGAGCGTAAAATGA
CCATTCTGCCCTTGGAGGCGTCACAGCGTCGAGACCCTTCAACCCAGGCGTCGGGACGCTGCTCAAATAAGGAAAAGAACGTGGGCGTGAAGCAGAAGAAAGAGCGTCGC
GACACTACAGCCATAGCGAATTCGACTATGGAAGTTGGAAGTCTGATCGACAAGGTGGAGCAAGTGGATTTAGATGAGGACTCAAATCAAACTTGGGCATGTTCGCTGAG
AGTTAAAGTGCAAATTGAGGACACACCATTAAAGAATGTGAGCAGTGCGGGGATACCGATGAAAATGATCTCCCTTACAGAACATGGTTACGCGAATTTTGGGAGGACGG
TCGAGGGGAAGGAGGAATTTCAAAGTCAGAACAACAAGGATCAATCGGAAAATAACATTATCTCACTGGCAAAAGGACAGTCAAGCAAGTTGAATCAGTCCGACAAGTTG
GAAGAACCAGTTTCGGCAAAGGGCCAAACAATCAAATCCACAAGCAAGGCAATTGAGAAAGATAAGGAATTAATTACCAAGATTGAAGGCGAAAATAGCGGTGCAACGAC
TCTTTTGGATCTAAAAAATGTGGAGGACTAG
Protein sequenceShow/hide protein sequence
MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDDQVTLVAVPRGRQRPRLLDTFPGSFTTFGIRAALIHNICDSNLKQVSCLEI
FDRQGNPVFTFLGLIFKSVLGFSDLRSKGPHRSFGSDSRLKRAKSERKMTILPLEASQRRDPSTQASGRCSNKEKNVGVKRKQERRDATAIASREREAQLVKEVGLLDNK
LSILTSLCEQLVHGYQIKQPHQHYRPSNSGKSLEDQIYELGKYTLQFQESTRVELKDMSNNIDKIETYVTKLEKHVEQQAQLTQETILTTEVPFVAKVDDEEIECPLPSH
DQSCEDPHTKSLQFLPIVEVFIFSNPMLKQGRRLVMYYSFDYFNYLMVGSLASPHRSFGSDLGLKRAKPERKMTILPLEASQRRDPSTQASGRCSNKEKNVGVKQKKERR
DTTAIANSTMEVGSLIDKVEQVDLDEDSNQTWACSLRVKVQIEDTPLKNVSSAGIPMKMISLTEHGYANFGRTVEGKEEFQSQNNKDQSENNIISLAKGQSSKLNQSDKL
EEPVSAKGQTIKSTSKAIEKDKELITKIEGENSGATTLLDLKNVED