CuGenDBv2

Gene ID	Spg023671
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pumilio, putative
Genome location	scaffold13:567767..568722
RNA-Seq Expression	Spg023671
Synteny	Spg023671
Gene Ontology terms	GO:0061158 - 3'-UTR-mediated mRNA destabilization (biological process) GO:0005737 - cytoplasm (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR001313 - Pumilio RNA-binding repeat IPR011989 - Armadillo-like helical IPR016024 - Armadillo-type fold IPR033133 - Pumilio homology domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0068184.1 pumilio-like protein 5 isoform X2 [Cucumis melo var. makuwa]

3.9e-23

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI
        MMKDQFANYVVQKIIEICND+QRE LLNRI+GHLQALKKYTYGKHIVARLEQLSGEGAFI
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI

TYK21106.1 pumilio-like protein 5 isoform X2 [Cucumis melo var. makuwa]

3.9e-23

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI
        MMKDQFANYVVQKIIEICND+QRE LLNRI+GHLQALKKYTYGKHIVARLEQLSGEGAFI
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI

XP_011651691.1 pumilio homolog 5 [Cucumis sativus]

8.2e-21

94.64

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGE
        MMKDQFANYVVQKIIEICND+QRE LLNRI+GHLQALKKYTYGKHIVARLEQLSGE
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGE

XP_022148156.1 pumilio homolog 5 isoform X1 [Momordica charantia]

4.6e-24

95.16

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Query:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS
        TMMKDQFANYV+QKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGA  S
Subjt:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS

XP_022148158.1 pumilio homolog 5 isoform X2 [Momordica charantia]

2.3e-23

98.28

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Query:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        TMMKDQFANYV+QKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
Subjt:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E512 pumilio homolog 5 isoform X1

4.0e-21

94.64

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGE
        MMKDQFANYVVQKIIEICND+QRE LLNRI+GHLQALKKYTYGKHIVARLEQLSGE
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGE

A0A5A7VL92 Pumilio-like protein 5 isoform X2

1.9e-23

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI
        MMKDQFANYVVQKIIEICND+QRE LLNRI+GHLQALKKYTYGKHIVARLEQLSGEGAFI
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI

A0A5D3DC21 Pumilio-like protein 5 isoform X2

1.9e-23

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI
        MMKDQFANYVVQKIIEICND+QRE LLNRI+GHLQALKKYTYGKHIVARLEQLSGEGAFI
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFI

A0A6J1D3B4 pumilio homolog 5 isoform X2

1.1e-23

98.28

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Query:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        TMMKDQFANYV+QKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
Subjt:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

A0A6J1D4J0 pumilio homolog 5 isoform X1

2.2e-24

95.16

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Query:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS
        TMMKDQFANYV+QKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGA  S
Subjt:  TMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS

SwissProt top hits

e value

%identity

Alignment

Q9LJX4 Pumilio homolog 5

1.1e-17

68.85

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS
        MMKDQFANYVVQK++EI  D+QRE+L+ R++ HLQ+L+KYTYGKHIVAR EQL GE + +S
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS

Q9SS47 Pumilio homolog 4

3.5e-14

59.32

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKD F NYVVQK++E C+D+   ++L+RI+ HL ALK+YTYGKHIVAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

Q9ZW02 Pumilio homolog 3

6.7e-18

69.49

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKHIVAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

Q9ZW06 Pumilio homolog 2

6.7e-18

69.49

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKHIVAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

Q9ZW07 Pumilio homolog 1

8.8e-18

67.8

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKH+VAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

Arabidopsis top hits

e value

%identity

Alignment

AT2G29140.1 pumilio 3

4.8e-19

69.49

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKHIVAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

AT2G29190.1 pumilio 2

4.8e-19

69.49

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKHIVAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

AT2G29190.2 pumilio 2

4.8e-19

69.49

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKHIVAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

AT2G29200.1 pumilio 1

6.2e-19

67.8

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Query:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG
        + MMKDQFANYVVQK++E C+D+QRE++L RI+ HL ALKKYTYGKH+VAR+E+L   G
Subjt:  RTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEG

AT3G20250.1 pumilio 5

8.1e-19

68.85

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Query:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS
        MMKDQFANYVVQK++EI  D+QRE+L+ R++ HLQ+L+KYTYGKHIVAR EQL GE + +S
Subjt:  MMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS

Sequences

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CDS sequence

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ATGGAATCGTGGAAGACTCCGAAACGCCGGTGGGAGAGCTTGTCGGTGAATGGGTCGACGGGAGGAGGACTCGTTGGAGAAAGGTTTGGGCGGCTAGGGTTTTAT
TTTAGGACAATGATGAAAGACCAGTTCGCAAATTATGTTGTTCAAAAGATAATTGAAATATGCAACGATGAACAACGAGAGATGCTGTTGAATCGTATCAGAGGT
CATCTTCAAGCTTTGAAGAAATATACTTATGGGAAACACATAGTTGCTCGACTAGAGCAGTTGTCAGGTGAAGGTGCGTTTATATCTTAG

mRNA sequence

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Protein sequence

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MESWKTPKRRWESLSVNGSTGGGLVGERFGRLGFYFRTMMKDQFANYVVQKIIEICNDEQREMLLNRIRGHLQALKKYTYGKHIVARLEQLSGEGAFIS

Spg023671 (gene) of Sponge gourd (cylindrica) v1 genome