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Spg023697 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023697
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold13:12114446..12118819
RNA-Seq ExpressionSpg023697
SyntenySpg023697
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2979947.1 UDP-glucuronate 4-epimerase 3 [Olea europaea subsp. europaea]1.8e-2373.49Show/hide
Query:  FEMIPLPVSTSVGC-LIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        F+ +P  V +  G  ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  FEMIPLPVSTSVGC-LIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

CAA7047311.1 unnamed protein product [Microthlaspi erraticum]2.4e-2371.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

KAB5532366.1 hypothetical protein DKX38_019036 [Salix brachista]1.4e-2357.02Show/hide
Query:  SDICVWHFV------------GCNRLGSIDALDTQFVHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLIL
        +D+CV +FV             C + GS++ L+       E+ P        C    T  +GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLIL
Subjt:  SDICVWHFV------------GCNRLGSIDALDTQFVHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLIL

Query:  VESRIHRLARYYKKTKKFPPV
        VESRIHRLARYYKKTKK  PV
Subjt:  VESRIHRLARYYKKTKKFPPV

XP_010419539.1 PREDICTED: 40S ribosomal protein S13-2 [Camelina sativa]2.4e-2371.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

XP_011076311.1 40S ribosomal protein S13-like [Sesamum indicum]1.8e-2379.73Show/hide
Query:  STSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        S  +G ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  STSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

TrEMBL top hitse value%identityAlignment
A0A087GZH6 Ribosomal_S13_N domain-containing protein1.1e-2371.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A0D3BQ24 Ribosomal_S13_N domain-containing protein1.1e-2371.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A565BYF5 Ribosomal_S13_N domain-containing protein1.1e-2371.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A5N5KQC3 Ribosomal_S13_N domain-containing protein6.7e-2457.02Show/hide
Query:  SDICVWHFV------------GCNRLGSIDALDTQFVHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLIL
        +D+CV +FV             C + GS++ L+       E+ P        C    T  +GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLIL
Subjt:  SDICVWHFV------------GCNRLGSIDALDTQFVHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLIL

Query:  VESRIHRLARYYKKTKKFPPV
        VESRIHRLARYYKKTKK  PV
Subjt:  VESRIHRLARYYKKTKKFPPV

A0A6I9T785 40S ribosomal protein S13-like8.8e-2479.73Show/hide
Query:  STSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        S  +G ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  STSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

SwissProt top hitse value%identityAlignment
P59223 40S ribosomal protein S13-13.1e-2671.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

P59224 40S ribosomal protein S13-23.1e-2671.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

P62302 40S ribosomal protein S136.9e-2696.67Show/hide
Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

Q69UI1 40S ribosomal protein S13-27.6e-2570.24Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPP
        + D   IPL  S +   ++      GLAPEIPEDLY LIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKK PP
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPP

Q69UI2 40S ribosomal protein S13-17.6e-2570.24Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPP
        + D   IPL  S +   ++      GLAPEIPEDLY LIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKK PP
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPP

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S152.2e-2771.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

AT4G00100.1 ribosomal protein S13A2.2e-2771.76Show/hide
Query:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        + D   IP   S +   ++      GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  VHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCTTTTCCATTTCATTGTCCCAAATATCTCTTTGTTCTCTGTTCTCTCTTGAAGAGGTAGGCATCTCTGATATTTGTGTTTGGCATTTTGTCGGCTGTAATCG
TCTTGGAAGTATAGATGCGCTTGATACTCAATTTGTTCATGACTTTGAGATGATTCCTTTGCCCGTTTCAACATCTGTTGGTTGTTTGATAGAATGCACAAATCCTGTTG
GACTAGCTCCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGGAAGCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAGGTTG
ATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGTTTCCCCCTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCTTTTCCATTTCATTGTCCCAAATATCTCTTTGTTCTCTGTTCTCTCTTGAAGAGGTAGGCATCTCTGATATTTGTGTTTGGCATTTTGTCGGCTGTAATCG
TCTTGGAAGTATAGATGCGCTTGATACTCAATTTGTTCATGACTTTGAGATGATTCCTTTGCCCGTTTCAACATCTGTTGGTTGTTTGATAGAATGCACAAATCCTGTTG
GACTAGCTCCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGGAAGCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAGGTTG
ATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGTTTCCCCCTGTTTAG
Protein sequenceShow/hide protein sequence
MGFFSISLSQISLCSLFSLEEVGISDICVWHFVGCNRLGSIDALDTQFVHDFEMIPLPVSTSVGCLIECTNPVGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRL
ILVESRIHRLARYYKKTKKFPPV