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Spg023728 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023728
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpeptide chain release factor PrfB2, chloroplastic
Genome locationscaffold13:9659444..9669296
RNA-Seq ExpressionSpg023728
SyntenySpg023728
Gene Ontology termsGO:0006415 - translational termination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016149 - translation release factor activity, codon specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016900916.1 PREDICTED: peptide chain release factor PrfB2, chloroplastic [Cucumis melo]7.0e-1382.61Show/hide
Query:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        +A+EPST+DGLTVEGI+GNRW ILDES+SDWRSHAA  AQSIHLIK
Subjt:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

XP_038878322.1 peptide chain release factor PrfB2, chloroplastic isoform X1 [Benincasa hispida]4.1e-1384.78Show/hide
Query:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        VA+EPST+DGLTVEGI+GNRW ILDES+SDWRSHAA  AQSIHLIK
Subjt:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

XP_038878326.1 peptide chain release factor PrfB2, chloroplastic isoform X2 [Benincasa hispida]4.1e-1384.78Show/hide
Query:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        VA+EPST+DGLTVEGI+GNRW ILDES+SDWRSHAA  AQSIHLIK
Subjt:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

XP_038905161.1 uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]7.0e-1344.6Show/hide
Query:  QARSPVSSRNLISQVLLGLDEEYNPVVAMIHERGDITWSEMQVELLVFEKQLELQTAQKSIVSFSQ--SVSVNLANTKGIPNANNNTNRGWNFNNNQRGQ
        QA SP+  R L+SQVLLGLDEEYN +VAMI  R D++W +MQ ELL++E++LE Q+ QK+ V F+Q  + SVN+ NT+ + N NN T        N   Q
Subjt:  QARSPVSSRNLISQVLLGLDEEYNPVVAMIHERGDITWSEMQVELLVFEKQLELQTAQKSIVSFSQ--SVSVNLANTKGIPNANNNTNRGWNFNNNQRGQ

Query:  NSNSGQKGGSQFNNNRGRGGRGRGYSNCGNYDNNNNRPV
        +   GQ+GG      RGRG              NN +PV
Subjt:  NSNSGQKGGSQFNNNRGRGGRGRGYSNCGNYDNNNNRPV

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]7.0e-1344.6Show/hide
Query:  QARSPVSSRNLISQVLLGLDEEYNPVVAMIHERGDITWSEMQVELLVFEKQLELQTAQKSIVSFSQ--SVSVNLANTKGIPNANNNTNRGWNFNNNQRGQ
        QA SP+  R L+SQVLLGLDEEYN +VAMI  R D++W +MQ ELL++E++LE Q+ QK+ V F+Q  + SVN+ NT+ + N NN T        N   Q
Subjt:  QARSPVSSRNLISQVLLGLDEEYNPVVAMIHERGDITWSEMQVELLVFEKQLELQTAQKSIVSFSQ--SVSVNLANTKGIPNANNNTNRGWNFNNNQRGQ

Query:  NSNSGQKGGSQFNNNRGRGGRGRGYSNCGNYDNNNNRPV
        +   GQ+GG      RGRG              NN +PV
Subjt:  NSNSGQKGGSQFNNNRGRGGRGRGYSNCGNYDNNNNRPV

TrEMBL top hitse value%identityAlignment
A0A1S4DY60 peptide chain release factor PrfB2, chloroplastic3.4e-1382.61Show/hide
Query:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        +A+EPST+DGLTVEGI+GNRW ILDES+SDWRSHAA  AQSIHLIK
Subjt:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

A0A5D3CEK4 Peptide chain release factor PrfB23.4e-1382.61Show/hide
Query:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        +A+EPST+DGLTVEGI+GNRW ILDES+SDWRSHAA  AQSIHLIK
Subjt:  VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

A0A6J1DZU3 peptide chain release factor PrfB2, chloroplastic isoform X19.9e-1362.32Show/hide
Query:  SNCGNYDNNNNRP----------VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        S C N+   +  P          VA+EPST+DGLTV+GIIGNRW ILDES+SDWRSHAA  AQSIHLIK
Subjt:  SNCGNYDNNNNRP----------VAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

A0A6J1EUC0 peptide chain release factor PrfB2, chloroplastic4.5e-1365.71Show/hide
Query:  NCGNYDNNN------------NRPVAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        NCG  D  N            +  VAIEPSTADGLTVEGIIGNRW IL+ES+SDWRSHAA  AQSIHLIK
Subjt:  NCGNYDNNN------------NRPVAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

A0A6J1JP75 peptide chain release factor PrfB2, chloroplastic4.5e-1365.71Show/hide
Query:  NCGNYDNNN------------NRPVAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        NCG  D  N            +  VAIEPSTADGLTVEGIIGNRW IL+ES+SDWRSHAA  AQSIHLIK
Subjt:  NCGNYDNNN------------NRPVAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

SwissProt top hitse value%identityAlignment
F4I532 Peptide chain release factor PrfB2, chloroplastic8.7e-0643.37Show/hide
Query:  SQFNNNRGR----GGRGRGYSNCGNYDNNNNRPVAIE----PSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        S F  N G+      R   Y+  G+   ++ R ++ E     +T DGLTVE II N+W ILDE++ DW+SHAA  AQSI +IK
Subjt:  SQFNNNRGR----GGRGRGYSNCGNYDNNNNRPVAIE----PSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK

Arabidopsis top hitse value%identityAlignment
AT1G56350.1 Peptide chain release factor 26.2e-0743.37Show/hide
Query:  SQFNNNRGR----GGRGRGYSNCGNYDNNNNRPVAIE----PSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK
        S F  N G+      R   Y+  G+   ++ R ++ E     +T DGLTVE II N+W ILDE++ DW+SHAA  AQSI +IK
Subjt:  SQFNNNRGR----GGRGRGYSNCGNYDNNNNRPVAIE----PSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGGCCGAGGCCGATCATTCAGCAGGCCGAGCCCGTTCGCTTCCGTTCGGTCCCTGCTGCCTCTAGCCTCCCCGGTTCTGCCTGGTTCGTCCCGAAACGCCTCCG
AATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCAGTGTGGCAAGCACCACACCTGTTTGCAGCCGCCTTTTGAATATAGCCGTGCACTGTGTTGCGAAGAGAG
TTGCGAACCTTCCCCTTCCATGCGCGAGTTCTTCGTCTTCTGGGTTCGGTAGCAGGATCTCCCCTTCGCGGGAAACAGGAGCCAAAATGGCCAACGCCTCGACGAATAGT
GGAGTATCCTTGGGAATAAGTAGCCCAACTTCGTTCAGCTCACCGCCCCTCAATCAATTGTTGAATCAAATCACAACAATTAAGTTGGATCGAGGGCAAGCTAGAAGTCC
TGTTTCATCGAGAAATCTGATCTCTCAAGTCCTACTGGGGCTAGACGAAGAATATAATCCTGTTGTTGCAATGATCCACGAGAGAGGAGATATAACCTGGTCGGAAATGC
AAGTCGAACTCCTAGTCTTTGAGAAGCAGCTGGAACTTCAAACAGCTCAGAAATCTATAGTTTCTTTCAGCCAAAGTGTGTCTGTCAATTTAGCTAATACCAAGGGGATA
CCTAATGCGAACAACAATACAAATAGAGGATGGAACTTCAACAATAATCAAAGAGGTCAGAACTCTAACAGTGGTCAGAAGGGTGGATCACAGTTCAACAACAATAGAGG
TCGTGGAGGCCGAGGCAGAGGCTACTCCAATTGTGGCAATTATGACAATAACAACAATCGACCGGTGGCGATTGAGCCTTCAACAGCCGATGGGCTTACAGTCGAAGGAA
TAATTGGAAATCGATGGAGGATTCTTGATGAGAGCAAGAGCGATTGGAGGAGCCATGCTGCTACAAATGCCCAATCCATTCATCTGATCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGGCCGAGGCCGATCATTCAGCAGGCCGAGCCCGTTCGCTTCCGTTCGGTCCCTGCTGCCTCTAGCCTCCCCGGTTCTGCCTGGTTCGTCCCGAAACGCCTCCG
AATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCAGTGTGGCAAGCACCACACCTGTTTGCAGCCGCCTTTTGAATATAGCCGTGCACTGTGTTGCGAAGAGAG
TTGCGAACCTTCCCCTTCCATGCGCGAGTTCTTCGTCTTCTGGGTTCGGTAGCAGGATCTCCCCTTCGCGGGAAACAGGAGCCAAAATGGCCAACGCCTCGACGAATAGT
GGAGTATCCTTGGGAATAAGTAGCCCAACTTCGTTCAGCTCACCGCCCCTCAATCAATTGTTGAATCAAATCACAACAATTAAGTTGGATCGAGGGCAAGCTAGAAGTCC
TGTTTCATCGAGAAATCTGATCTCTCAAGTCCTACTGGGGCTAGACGAAGAATATAATCCTGTTGTTGCAATGATCCACGAGAGAGGAGATATAACCTGGTCGGAAATGC
AAGTCGAACTCCTAGTCTTTGAGAAGCAGCTGGAACTTCAAACAGCTCAGAAATCTATAGTTTCTTTCAGCCAAAGTGTGTCTGTCAATTTAGCTAATACCAAGGGGATA
CCTAATGCGAACAACAATACAAATAGAGGATGGAACTTCAACAATAATCAAAGAGGTCAGAACTCTAACAGTGGTCAGAAGGGTGGATCACAGTTCAACAACAATAGAGG
TCGTGGAGGCCGAGGCAGAGGCTACTCCAATTGTGGCAATTATGACAATAACAACAATCGACCGGTGGCGATTGAGCCTTCAACAGCCGATGGGCTTACAGTCGAAGGAA
TAATTGGAAATCGATGGAGGATTCTTGATGAGAGCAAGAGCGATTGGAGGAGCCATGCTGCTACAAATGCCCAATCCATTCATCTGATCAAGTAG
Protein sequenceShow/hide protein sequence
MPRPRPIIQQAEPVRFRSVPAASSLPGSAWFVPKRLRIPKNPRSMSSIGGSVASTTPVCSRLLNIAVHCVAKRVANLPLPCASSSSSGFGSRISPSRETGAKMANASTNS
GVSLGISSPTSFSSPPLNQLLNQITTIKLDRGQARSPVSSRNLISQVLLGLDEEYNPVVAMIHERGDITWSEMQVELLVFEKQLELQTAQKSIVSFSQSVSVNLANTKGI
PNANNNTNRGWNFNNNQRGQNSNSGQKGGSQFNNNRGRGGRGRGYSNCGNYDNNNNRPVAIEPSTADGLTVEGIIGNRWRILDESKSDWRSHAATNAQSIHLIK