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Spg023751 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023751
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationscaffold13:10013448..10015621
RNA-Seq ExpressionSpg023751
SyntenySpg023751
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW26636.1 LINE-1 reverse transcriptase-like [Vitis vinifera]4.2e-1330.77Show/hide
Query:  GISRNIAWAAIDAAGASGGIIILWNESTFDVL--------------EIVEGWSWEKSTVSAPTR--------GMKKFNKFIEDAALLDIPITNGKYTWSS
        G+ R + W A+DA GA+GG+++ W+    +++               + +G+ W  S V    R         M++F++ I++  L D+P   G +TWS 
Subjt:  GISRNIAWAAIDAAGASGGIIILWNESTFDVL--------------EIVEGWSWEKSTVSAPTR--------GMKKFNKFIEDAALLDIPITNGKYTWSS

Query:  FRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL
             TM+ IDRFL+T++  S F       L R  SDH+PI L
Subjt:  FRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL

RVW48649.1 LINE-1 reverse transcriptase-like [Vitis vinifera]4.2e-1333.6Show/hide
Query:  GISRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----WSWEKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDN
        GI R + W  +DA G++GG++I W++ T +V+E+  G       E+S     T  M++F + +++  L+++P+  G  TWS  R       +DRFL+T N
Subjt:  GISRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----WSWEKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDN

Query:  ISSKFGSARARKLDRNTSDHYPICL
            F      +L R TSD++PI L
Subjt:  ISSKFGSARARKLDRNTSDHYPICL

RVX17860.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.4e-1330.43Show/hide
Query:  LAEYGISRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG------WSWEKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDR
        +   G+ R + W A+D+ GA+GGI++ W+    ++++I +G         E++        M+KF + IED  L D+P+  G +TW+      + + +D 
Subjt:  LAEYGISRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG------WSWEKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDR

Query:  FLITDNISSKFGSARARKLDRNTSDHYPICLTLVASSR
        FLI +   + FG  R   L R  SDH+PI L +    R
Subjt:  FLITDNISSKFGSARARKLDRNTSDHYPICLTLVASSR

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.4e-1632.2Show/hide
Query:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST
        S +IAWA++DA+GASGGII+LW++ +   +E++ G                                                          WS E S+
Subjt:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST

Query:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL
         + P  GM KFN FI+ A L+D  + NG+YTWS+ RP   ++ I+RFL +   S KF     ++L R  SDHYPI L
Subjt:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]2.4e-1631.07Show/hide
Query:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST
        +  I W+A+DA+G + GI+ILWN+      E++EG                                                          WSWEKS 
Subjt:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST

Query:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL
            T+ M  FN FIED++L+D+P+TNG++TWS      + +LID FL+T+    K G   A+++ R TSDH+PI L
Subjt:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL

TrEMBL top hitse value%identityAlignment
A0A2N9EX59 Reverse transcriptase domain-containing protein7.0e-1434.06Show/hide
Query:  SRNIAWAAIDAAGASGGIIILWN--------------------ESTFDVLE-IVEGWSWEKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRP
        ++++ W  + + GA+GGI+++W+                     S FD  E I  G+  EKS ++A +  M  F+ FI +  LLD+P+  G +TWS+ R 
Subjt:  SRNIAWAAIDAAGASGGIIILWN--------------------ESTFDVLE-IVEGWSWEKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRP

Query:  RPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPI
         P  + IDRFL++   +  FG    R+L R  SDHYPI
Subjt:  RPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPI

A0A2N9IIN3 Methionine aminopeptidase6.3e-1533.54Show/hide
Query:  SRNIAWAAIDAAGASGGIIILWNE-----STFDVLEIVEGWS--W-------------EKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPR
        S ++ W ++ + GASGGI+++W++     S    + IV  W   W             EKS VSA T  M  F+ FI +  LLD P+  G++TWS+ R  
Subjt:  SRNIAWAAIDAAGASGGIIILWNE-----STFDVLEIVEGWS--W-------------EKSTVSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPR

Query:  PTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICLTL--VASSRRKYAISEILSVDG
         +M+ IDRFL + + +  FG    R+L R  SDH+P+ L    +   +R +     L  DG
Subjt:  PTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICLTL--VASSRRKYAISEILSVDG

A0A438CTV6 LINE-1 reverse transcriptase-like2.0e-1330.77Show/hide
Query:  GISRNIAWAAIDAAGASGGIIILWNESTFDVL--------------EIVEGWSWEKSTVSAPTR--------GMKKFNKFIEDAALLDIPITNGKYTWSS
        G+ R + W A+DA GA+GG+++ W+    +++               + +G+ W  S V    R         M++F++ I++  L D+P   G +TWS 
Subjt:  GISRNIAWAAIDAAGASGGIIILWNESTFDVL--------------EIVEGWSWEKSTVSAPTR--------GMKKFNKFIEDAALLDIPITNGKYTWSS

Query:  FRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL
             TM+ IDRFL+T++  S F       L R  SDH+PI L
Subjt:  FRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL

A0A6J1CVN2 uncharacterized protein LOC1110146571.1e-1632.2Show/hide
Query:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST
        S +IAWA++DA+GASGGII+LW++ +   +E++ G                                                          WS E S+
Subjt:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST

Query:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL
         + P  GM KFN FI+ A L+D  + NG+YTWS+ RP   ++ I+RFL +   S KF     ++L R  SDHYPI L
Subjt:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL

A0A6J1E2G6 uncharacterized protein LOC1110254051.1e-1631.07Show/hide
Query:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST
        +  I W+A+DA+G + GI+ILWN+      E++EG                                                          WSWEKS 
Subjt:  SRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEG----------------------------------------------------------WSWEKST

Query:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL
            T+ M  FN FIED++L+D+P+TNG++TWS      + +LID FL+T+    K G   A+++ R TSDH+PI L
Subjt:  VSAPTRGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGGAAAATGGAAAAGGGGATGATTCCCAAATTTCGTACAGTTTCGCTGCCCAAGAAGACCCTATCAATGTTCTAGGTGCAGAAGAAGATCAGACTCCATCTGA
CATGGGCCCACATCCTTTAGCTAACCACACGTTATCTCAATCCCAAATAATCTCCCCTACTAGAAAATCTGATACCGAAGCCACAAAAGCCTCCAACCCGAACTCGAATC
CCCAAAAAAACCCATGTACCAATGCCCAGCCTACTCAAGAACCTTCGTCACCAAACCCACCTTGTCTGGAAAACCAAAACCAAACCCGACCCACACAAGGCAAATCCCAT
ATTGGCCCAATCCGCATCAATCCTCAGCCTCCTCCCAGCCCCACTCTTGATAGCCCAATCCCATCCCATAGCCTACAGTGTGGACGGAAAAAGCCCATCACCATCAACAA
TGGAGAGACTTTTCTCCTCACGGGCACTAAGCATTCCACAGATACGGCTTACCAGATATCAGATTCGGAAGGAGATTTCTCTTCCCCATGTTCTCCAGACGTGAACAACT
CTCCTATCGTGCCCCATCCCAGGGAGGTAAACAAAGTTGACTCTCCCCCAACTATTTCCAATCTTTTTGGCTTACAAGAAGAACAATCCACCAAAATAGATTCTCCCATC
CCTTTGAGGATTGAGGAACCAGTGGAGGAAGATACTCATCAGAACTTGGCTATGGAGAGCTCTATGCTGATTGACATAAATGTTGAGGAATTTGAAGAGGTCGAAACAGA
TCCAGACACCCCACACCAATCGCGAGATCCCACAGTCTATTTTCCCATTCTTTTCCCTTGGCTGGCCGAATATGGCATCTCTCGGAACATTGCTTGGGCAGCTATTGATG
CCGCTGGAGCTTCTGGAGGCATTATCATTTTGTGGAATGAATCCACCTTTGATGTTTTGGAGATTGTTGAAGGATGGTCTTGGGAGAAATCGACTGTTTCAGCACCCACT
CGGGGTATGAAAAAATTCAACAAGTTCATTGAAGACGCTGCCCTTCTGGATATCCCCATAACCAATGGAAAGTACACCTGGTCCAGTTTTCGCCCAAGACCCACCATGAC
TCTCATTGATAGATTTCTTATTACAGACAATATTTCCTCCAAATTTGGATCAGCTAGGGCTCGGAAATTGGATCGAAATACATCAGACCATTATCCAATTTGCCTTACGC
TGGTTGCATCAAGCAGAAGAAAATACGCCATTTCTGAGATTTTATCTGTTGATGGTCACAACCTTATGATCGATGAT
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGGAAAATGGAAAAGGGGATGATTCCCAAATTTCGTACAGTTTCGCTGCCCAAGAAGACCCTATCAATGTTCTAGGTGCAGAAGAAGATCAGACTCCATCTGA
CATGGGCCCACATCCTTTAGCTAACCACACGTTATCTCAATCCCAAATAATCTCCCCTACTAGAAAATCTGATACCGAAGCCACAAAAGCCTCCAACCCGAACTCGAATC
CCCAAAAAAACCCATGTACCAATGCCCAGCCTACTCAAGAACCTTCGTCACCAAACCCACCTTGTCTGGAAAACCAAAACCAAACCCGACCCACACAAGGCAAATCCCAT
ATTGGCCCAATCCGCATCAATCCTCAGCCTCCTCCCAGCCCCACTCTTGATAGCCCAATCCCATCCCATAGCCTACAGTGTGGACGGAAAAAGCCCATCACCATCAACAA
TGGAGAGACTTTTCTCCTCACGGGCACTAAGCATTCCACAGATACGGCTTACCAGATATCAGATTCGGAAGGAGATTTCTCTTCCCCATGTTCTCCAGACGTGAACAACT
CTCCTATCGTGCCCCATCCCAGGGAGGTAAACAAAGTTGACTCTCCCCCAACTATTTCCAATCTTTTTGGCTTACAAGAAGAACAATCCACCAAAATAGATTCTCCCATC
CCTTTGAGGATTGAGGAACCAGTGGAGGAAGATACTCATCAGAACTTGGCTATGGAGAGCTCTATGCTGATTGACATAAATGTTGAGGAATTTGAAGAGGTCGAAACAGA
TCCAGACACCCCACACCAATCGCGAGATCCCACAGTCTATTTTCCCATTCTTTTCCCTTGGCTGGCCGAATATGGCATCTCTCGGAACATTGCTTGGGCAGCTATTGATG
CCGCTGGAGCTTCTGGAGGCATTATCATTTTGTGGAATGAATCCACCTTTGATGTTTTGGAGATTGTTGAAGGATGGTCTTGGGAGAAATCGACTGTTTCAGCACCCACT
CGGGGTATGAAAAAATTCAACAAGTTCATTGAAGACGCTGCCCTTCTGGATATCCCCATAACCAATGGAAAGTACACCTGGTCCAGTTTTCGCCCAAGACCCACCATGAC
TCTCATTGATAGATTTCTTATTACAGACAATATTTCCTCCAAATTTGGATCAGCTAGGGCTCGGAAATTGGATCGAAATACATCAGACCATTATCCAATTTGCCTTACGC
TGGTTGCATCAAGCAGAAGAAAATACGCCATTTCTGAGATTTTATCTGTTGATGGTCACAACCTTATGATCGATGAT
Protein sequenceShow/hide protein sequence
MEKENGKGDDSQISYSFAAQEDPINVLGAEEDQTPSDMGPHPLANHTLSQSQIISPTRKSDTEATKASNPNSNPQKNPCTNAQPTQEPSSPNPPCLENQNQTRPTQGKSH
IGPIRINPQPPPSPTLDSPIPSHSLQCGRKKPITINNGETFLLTGTKHSTDTAYQISDSEGDFSSPCSPDVNNSPIVPHPREVNKVDSPPTISNLFGLQEEQSTKIDSPI
PLRIEEPVEEDTHQNLAMESSMLIDINVEEFEEVETDPDTPHQSRDPTVYFPILFPWLAEYGISRNIAWAAIDAAGASGGIIILWNESTFDVLEIVEGWSWEKSTVSAPT
RGMKKFNKFIEDAALLDIPITNGKYTWSSFRPRPTMTLIDRFLITDNISSKFGSARARKLDRNTSDHYPICLTLVASSRRKYAISEILSVDGHNLMIDD