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Spg023872 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023872
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold13:11913644..11915712
RNA-Seq ExpressionSpg023872
SyntenySpg023872
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025985.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0747.83Show/hide
Query:  VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQSS
        VEIELPVPD LP   ++          +++         EDDVCWLH V + K  G SGGGV+TWYQSS
Subjt:  VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQSS

KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.3e-0949Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQ
        PRGNR SLQT EL KT                 VEIELPV D LP     S  S G  S S         + EDDVCWLH V + K AG  GGGVTTWYQ
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQ

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.1e-0844.9Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVS--LEEDDVCWLHAVSQTKLAGSSGGGVT
        PRGNRPSLQT +L KT                 VEIELPVPD LP            TS  +F+ + + +  +  DDVCWLHAV + K AG  GGGVT
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVS--LEEDDVCWLHAVSQTKLAGSSGGGVT

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.0e-0841.59Show/hide
Query:  PRGNRPSLQTRELAKT----------------------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQT
        PRGNRPSLQT EL KT                            VEIELP PD LP   ++       S  C  GS         +  DDVCWLHAV + 
Subjt:  PRGNRPSLQTRELAKT----------------------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQT

Query:  KLAGSSGGGVTTW
        K AG  GGGVTTW
Subjt:  KLAGSSGGGVTTW

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]1.8e-0845.45Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGV
        PRGNRPSLQT EL KT                 VEIELPVPD LP   ++       S  C  GS         +  DDVCWLHAV + K+AG  GGGV
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7SNE5 Reverse transcriptase2.2e-0747.83Show/hide
Query:  VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQSS
        VEIELPVPD LP   ++          +++         EDDVCWLH V + K  G SGGGV+TWYQSS
Subjt:  VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQSS

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.0e-0844.9Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVS--LEEDDVCWLHAVSQTKLAGSSGGGVT
        PRGNRPSLQT +L KT                 VEIELPVPD LP            TS  +F+ + + +  +  DDVCWLHAV + K AG  GGGVT
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVS--LEEDDVCWLHAVSQTKLAGSSGGGVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein6.2e-1049Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQ
        PRGNR SLQT EL KT                 VEIELPV D LP     S  S G  S S         + EDDVCWLH V + K AG  GGGVTTWYQ
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTWYQ

A0A5D3CJL4 Retrotrans_gag domain-containing protein8.9e-0945.45Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGV
        PRGNRPSLQT EL KT                 VEIELPVPD LP   ++       S  C  GS         +  DDVCWLHAV + K+AG  GGGV
Subjt:  PRGNRPSLQTRELAKT-----------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGV

A0A5D3DVW9 DNA/RNA polymerases superfamily protein3.4e-0841.59Show/hide
Query:  PRGNRPSLQTRELAKT----------------------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQT
        PRGNRPSLQT EL KT                            VEIELP PD LP   ++       S  C  GS         +  DDVCWLHAV + 
Subjt:  PRGNRPSLQTRELAKT----------------------------VEIELPVPDKLPKFIFQSE----LSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQT

Query:  KLAGSSGGGVTTW
        K AG  GGGVTTW
Subjt:  KLAGSSGGGVTTW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGGAAGAAGAAGCTTGCTGGAGGTATGAGGTTGAAGAAGAGAGGAAAGGTTCATGCAAGTGCAACCATGGCAGAATCTGGGCCAAGAGGAAATAGGCCGAGTCT
ACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTTTATTTTCCAAAGTGAATTAAGTCAGGGCTGCACTTCTGGTTCAA
CGTTTCAGCAGGATCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTCCCAGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGG
TATCAAAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGGAAGAAGAAGCTTGCTGGAGGTATGAGGTTGAAGAAGAGAGGAAAGGTTCATGCAAGTGCAACCATGGCAGAATCTGGGCCAAGAGGAAATAGGCCGAGTCT
ACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTTTATTTTCCAAAGTGAATTAAGTCAGGGCTGCACTTCTGGTTCAA
CGTTTCAGCAGGATCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTCCCAGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGG
TATCAAAGCAGTTAG
Protein sequenceShow/hide protein sequence
MKRKKKLAGGMRLKKRGKVHASATMAESGPRGNRPSLQTRELAKTVEIELPVPDKLPKFIFQSELSQGCTSGSTFQQDQQVSLEEDDVCWLHAVSQTKLAGSSGGGVTTW
YQSS