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Spg023874 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023874
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold13:8347464..8347742
RNA-Seq ExpressionSpg023874
SyntenySpg023874
Gene Ontology termsNA
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]9.3e-2774.16Show/hide
Query:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR
        MASS SC SVF+ MAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D NPQIQDSDDVFPGL+IKITP++ SRKLL R
Subjt:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR

KAG7013356.1 hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2775.28Show/hide
Query:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR
        MASS SC SVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D NPQIQDSDDVFPGL+IKITP++ SRKLL R
Subjt:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR

KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]2.9e-2072.09Show/hide
Query:  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVI-SRKLLL
        S +SVF+  MALI+ +ASAES     +PCD+IYVV EGETLHTISAKC DPFI+D NP IQDSDDVFPGL+I+ITPT+I SRKLLL
Subjt:  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVI-SRKLLL

XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]1.9e-2775.28Show/hide
Query:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR
        MASS SC SVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D NPQIQDSDDVFPGL+IKITP++ SRKLL R
Subjt:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR

XP_023006696.1 uncharacterized protein LOC111499354 [Cucurbita maxima]8.4e-2875.28Show/hide
Query:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR
        MASS SCYSVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D NPQIQDSDDVFPGL+IKITP++ SRKL  R
Subjt:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR

TrEMBL top hitse value%identityAlignment
A0A0A0K9P3 LysM domain-containing protein1.4e-2072.09Show/hide
Query:  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVI-SRKLLL
        S +SVF+  MALI+ +ASAES     +PCD+IYVV EGETLHTISAKC DPFI+D NP IQDSDDVFPGL+I+ITPT+I SRKLLL
Subjt:  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVI-SRKLLL

A0A5D3DLK6 Uncharacterized protein5.3e-2070.93Show/hide
Query:  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVI-SRKLLL
        S +SVF+  MALI+ +ASAES     +PC++IYVV EGETLHTISAKC DPFI+D NP IQDSDDVFPGL+I+ITPT+I SRKLLL
Subjt:  SCYSVFL-FMALIL-LASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVI-SRKLLL

A0A6J1H7L7 uncharacterized protein LOC1114603139.0e-2875.28Show/hide
Query:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR
        MASS SC SVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D NPQIQDSDDVFPGL+IKITP++ SRKLL R
Subjt:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR

A0A6J1KYG6 uncharacterized protein LOC1114993544.1e-2875.28Show/hide
Query:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR
        MASS SCYSVF+FMAL+LLASA+SG     PCD+IY+V EGE+LH+ISAKCDDPFI+D NPQIQDSDDVFPGL+IKITP++ SRKL  R
Subjt:  MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLR

F6HP74 LysM domain-containing protein4.5e-1957.58Show/hide
Query:  MASSKSCYSVFLFMALILLAS--------AESGDDQHQ----PCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLL
        +A + SCY   + +ALILLAS         +     HQ    PCDEIYVVGEGETLHTIS KC DP+I+++NP I D DDVFPGLVIKITP+   RKLL
Subjt:  MASSKSCYSVFLFMALILLAS--------AESGDDQHQ----PCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.5e-1466Show/hide
Query:  CDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTV
        CDEIY V EGETL TIS KC DP+I++ NP I D DD+FPGL+I+ITP++
Subjt:  CDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTV

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein4.6e-1668.75Show/hide
Query:  QPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKI
        +PC+E+YVVGEG+TLH+IS KC DPFI++ NP I D DDVFPGL+IK+
Subjt:  QPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein1.2e-1951.14Show/hide
Query:  CYSVFLFMALILLASAESGDDQH--------QPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKL
        C +V L   ++LL+  E+             +PC+EIY+VGEGETLHTI  KC DPFI++ NP I D DDVFPGLV+KI P   +RKL
Subjt:  CYSVFLFMALILLASAESGDDQH--------QPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCGAAATCCTGCTACTCTGTTTTCCTCTTCATGGCGCTCATACTCCTCGCCTCTGCAGAATCCGGCGACGACCAGCATCAGCCTTGCGACGAGATCTACGT
CGTCGGAGAAGGCGAGACGCTGCACACGATCAGCGCCAAGTGCGACGATCCGTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTG
TCATTAAAATTACGCCAACGGTGATCTCCAGGAAGCTGTTGTTGAGGTCAGGTAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTCGAAATCCTGCTACTCTGTTTTCCTCTTCATGGCGCTCATACTCCTCGCCTCTGCAGAATCCGGCGACGACCAGCATCAGCCTTGCGACGAGATCTACGT
CGTCGGAGAAGGCGAGACGCTGCACACGATCAGCGCCAAGTGCGACGATCCGTTCATAATCGACGAGAATCCGCAGATTCAAGACTCCGATGATGTTTTCCCTGGACTTG
TCATTAAAATTACGCCAACGGTGATCTCCAGGAAGCTGTTGTTGAGGTCAGGTAGCTAG
Protein sequenceShow/hide protein sequence
MASSKSCYSVFLFMALILLASAESGDDQHQPCDEIYVVGEGETLHTISAKCDDPFIIDENPQIQDSDDVFPGLVIKITPTVISRKLLLRSGS