CuGenDBv2

Gene ID	Spg023893
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L13
Genome location	scaffold13:5972026..5976265
RNA-Seq Expression	Spg023893
Synteny	Spg023893
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001380 - Ribosomal protein L13e

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014861.1 hypothetical protein SDJN02_22491, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-09

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

XP_022141234.1 60S ribosomal protein L13-1 [Momordica charantia]

2.0e-09

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

XP_022923040.1 60S ribosomal protein L13-1 [Cucurbita moschata]

2.0e-09

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

XP_022984589.1 60S ribosomal protein L13-1 [Cucurbita maxima]

2.0e-09

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

XP_022990054.1 60S ribosomal protein L13-1-like [Cucurbita maxima]

2.0e-09

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CI06 60S ribosomal protein L13

9.6e-10

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

A0A6J1E5R8 60S ribosomal protein L13

9.6e-10

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

A0A6J1FUT5 60S ribosomal protein L13

9.6e-10

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

A0A6J1J2K7 60S ribosomal protein L13

9.6e-10

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

A0A6J1JSD3 60S ribosomal protein L13

9.6e-10

67.92

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        QEKAVKNFP+PTAGP RPIVHGQTLKYNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

SwissProt top hits

e value

%identity

Alignment

P41127 60S ribosomal protein L13-1

4.2e-10

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+R G    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

P41128 60S ribosomal protein L13-1

4.2e-10

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PTAGP RP+VHGQTLKYNMK+R G    ++ LK+  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

P41129 60S ribosomal protein L13-2

1.9e-10

60.38

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PTAGP RP+VHGQTLKYNMK+R G    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

Q9FF90 60S ribosomal protein L13-3

4.2e-10

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+RAG    ++ LK   +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

Q9SMT4 Putative 60S ribosomal protein L13-2

2.1e-09

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q KAVK FP+PTAGP RP+VH QTL YNMK+RAG    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

Arabidopsis top hits

e value

%identity

Alignment

AT3G49010.1 breast basic conserved 1

3.0e-11

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+R G    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

AT3G49010.2 breast basic conserved 1

3.0e-11

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+R G    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

AT3G49010.3 breast basic conserved 1

3.0e-11

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+R G    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

AT3G49010.4 breast basic conserved 1

3.0e-11

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+R G    ++ LKA  +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

AT5G23900.1 Ribosomal protein L13e family protein

3.0e-11

58.49

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Query:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP
        Q+KAVK FP+PT+GP RP+VHGQTLKYNMK+RAG    ++ LK   +   L P
Subjt:  QEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGP

Sequences

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CDS sequence

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ATGGTGAGTGCCATTCATCAAGAAAAGGCTGTGAAAAATTTCCCTCAGCCTACTGCTGGACCACCTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATG
AAAATGAGGGCTGGGGATTTTGGACTTGTCAAGACATTGAAAGCAGATGACTTGGCTTTTAACTTGGGACCTCGAACTCATTACAATTGGAAAAGAGGAGAAGAA
AAATTAGTGAAACCTTTGATATTGGTGATGTTGCTTCCATCCAATCCTCTTGATGCCAGAAATATTATGCTTGAAGGAGCCTGGTTCAAAGAAGCTGAGGCAAGT
ACCAACTGCCTCACCAACCTCTTGGCTCTTAAAGATTCTTTGATTGCTAGTTTGCATCATCGTAGACGAGAAATACTTGGAGGTGGTGGCAAAGCATTGTTGTCT
TATCTGAAGTGGCTATTTTCCCTTGCCCAAAAGTTTGGGTATGCTGATTGGATTCGATTTGATGCATCCATTGTCTGTGTGGCCTTGCTTATTACACTGCCGCAA
AAATCACGAGAAGAAAACGACGAGCAGAGGTCACCGAGACGAACAGGCCAGGGAGCCGAAGCTGAGCAGGCCGAGGCCGACCAAGCCAAAGCCGAGGCTGACCAG
AGATGTTCATCCAGACCGATTAGGAGGAAACCCAATAGGAGATCAGGATCATCTTTGGAGGACAAATAA

mRNA sequence

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Protein sequence

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MVSAIHQEKAVKNFPQPTAGPPRPIVHGQTLKYNMKMRAGDFGLVKTLKADDLAFNLGPRTHYNWKRGEEKLVKPLILVMLLPSNPLDARNIMLEGAWFKEAEAS
TNCLTNLLALKDSLIASLHHRRREILGGGGKALLSYLKWLFSLAQKFGYADWIRFDASIVCVALLITLPQKSREENDEQRSPRRTGQGAEAEQAEADQAKAEADQ
RCSSRPIRRKPNRRSGSSLEDK

Spg023893 (gene) of Sponge gourd (cylindrica) v1 genome