CuGenDBv2

Gene ID	Spg023906
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	scaffold13:4648668..4652649
RNA-Seq Expression	Spg023906
Synteny	Spg023906
Gene Ontology terms	GO:0000105 - histidine biosynthetic process (biological process) GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component) GO:0004424 - imidazoleglycerol-phosphate dehydratase activity (molecular function)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138383.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia]

2.1e-72

81.28

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Query:  FRFLGSDKLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKT
        FR    DKLRSR      SQEVCRR LLC+GMSLV FLAFNNG  PLLARAEE  ND  +EE+NGV+  IKSIFDPNE+TKSGKVLPKAYLKSA+E+VKT
Subjt:  FRFLGSDKLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKT

Query:  LRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        LRES+QEDPKD AKFRRTADAAKESIRDYLSNWLGQQ V QEESY  LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLDKAEEFL
Subjt:  LRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

XP_022958810.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata]

7.8e-75

87.22

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Query:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE
        KLRSR      SQE+CRR LLC+GMS VAFL FNN LTPLLARAEEM ND  EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQE
Subjt:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE

Query:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        D KD AKFRRTADAAKESIRDYL NWLGQQAVVQEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
Subjt:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

XP_023006140.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima]

2.8e-72

88.17

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Query:  SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRT
        SQE+CRR LLC+GMSLVAFL FNN LTP LARAEE  N + EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRT
Subjt:  SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRT

Query:  ADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        ADAAKESIRDYL NWLGQQAV+QEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
Subjt:  ADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]

3.2e-76

88.33

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Query:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE
        KLRSR      SQE+CRR+LLC+GMSLVAFL FNN LTPLLARAEEM NDN EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQE
Subjt:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE

Query:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        D KD AKFRRTADAAKESIRDYL NWLGQQAVVQEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
Subjt:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

5.6e-73

85.56

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Query:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE
        KLRSR      SQEVCRRHL+CSGMSLV FL  NNGLTP  ARAEE  ND  EEE+NGVI TIKSIFDPNEKTKSGKVLPKAYLKSA+EVVKTLRESLQE
Subjt:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE

Query:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        DPKD AKFRRTADAAKESIRDYLSNWLGQ+ VV+EESYVVLEKAI+SLAGFYAKAGPSAPLPE VKSDIL+DLDKAEEFL
Subjt:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K400 Uncharacterized protein

5.7e-71

83.89

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Query:  KLRSRS------QEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE
        KL SRS      QEVCRRHL+ +GMSLV FL FNNGLTP  A+AEEM N N EEE+NGVI TIKSIFDPNEKTKSGK+LPKAYLKSA+EVVKTLRESLQE
Subjt:  KLRSRS------QEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE

Query:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        DPKD AKFRRTADAAKESIRDYLSNWLG+Q VVQEESYVVLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DLDK EE L
Subjt:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

4.8e-70

85.8

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Query:  SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRT
        SQE+CRRHL+ +GMSLV FL FNNGLTP  A AEEM N N EEE+NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQEDPKD AKFRRT
Subjt:  SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRT

Query:  ADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        ADAAKESIRDYLSNWLG+Q +VQEESYVVLEKAIRSLAGFYAKAGPSAPLPE VKSDIL+DLDKAE  L
Subjt:  ADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.0e-72

81.28

Show/hide

Query:  FRFLGSDKLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKT
        FR    DKLRSR      SQEVCRR LLC+GMSLV FLAFNNG  PLLARAEE  ND  +EE+NGV+  IKSIFDPNE+TKSGKVLPKAYLKSA+E+VKT
Subjt:  FRFLGSDKLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKT

Query:  LRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        LRES+QEDPKD AKFRRTADAAKESIRDYLSNWLGQQ V QEESY  LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLDKAEEFL
Subjt:  LRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.8e-75

87.22

Show/hide

Query:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE
        KLRSR      SQE+CRR LLC+GMS VAFL FNN LTPLLARAEEM ND  EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQE
Subjt:  KLRSR------SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQE

Query:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        D KD AKFRRTADAAKESIRDYL NWLGQQAVVQEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
Subjt:  DPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.4e-72

88.17

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Query:  SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRT
        SQE+CRR LLC+GMSLVAFL FNN LTP LARAEE  N + EEE NGVI TIKSIFDPNE+TKSGKVLPKAYLKSA+EVVKTLRESLQED KD AKFRRT
Subjt:  SQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRT

Query:  ADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
        ADAAKESIRDYL NWLGQQAV+QEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
Subjt:  ADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

8.9e-05

28.43

Show/hide

Query:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEE
        Y+K    V+  +R +L     DP      ADA  E +R+  ++W+     ++A++ + S+  +  A+ +++G Y   GP+AP+P   K+ IL +++ AE+
Subjt:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEE

Query:  FL
         L
Subjt:  FL

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

4.2e-47

70.21

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Query:  LLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYV
        L A+A E   D GE    GV+   K++FDPNE+TKSGK LPKAYLKSA+EVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW GQ+ V  EESYV
Subjt:  LLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYV

Query:  VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
         LE  IR+LA FY+KAGPSAPLP++VK++IL+DL+KAEEFL
Subjt:  VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

6.3e-06

28.43

Show/hide

Query:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEE
        Y+K    V+  +R +L     DP      ADA  E +R+  ++W+     ++A++ + S+  +  A+ +++G Y   GP+AP+P   K+ IL +++ AE+
Subjt:  YLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLG----QQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEE

Query:  FL
         L
Subjt:  FL

AT1G05385.1 photosystem II 11 kDa protein-related

3.0e-48

70.21

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Query:  LLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYV
        L A+A E   D GE    GV+   K++FDPNE+TKSGK LPKAYLKSA+EVVKT+RESL+E+PKD AKFRR+ADAAKESIRDYLSNW GQ+ V  EESYV
Subjt:  LLARAEEMLNDNGEEENNGVIETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYV

Query:  VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL
         LE  IR+LA FY+KAGPSAPLP++VK++IL+DL+KAEEFL
Subjt:  VLEKAIRSLAGFYAKAGPSAPLPEDVKSDILNDLDKAEEFL

Sequences

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CDS sequence

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ATGTGTCAATTATCGTTGAGCTATGTTCACTTTACAGTTTTGCCACATTCTCCGTTGGCAGAACTAGAAACTTCAAGAAATTTCGATTATAGGGCTGTGTGCTTTGTTTC
TGTGAAGCCCCCCATGCACGTTGAAATCTGCATTGCATTTAGGTTTCTTGGTTCTGATAAACTGCGATCACGATCTCAAGAAGTTTGTAGGCGTCATTTATTATGTAGTG
GCATGTCGTTGGTTGCGTTTCTTGCATTTAACAATGGATTGACCCCATTGTTGGCTCGGGCGGAAGAAATGCTGAACGACAACGGCGAGGAAGAGAATAATGGAGTTATC
GAGACGATCAAATCAATATTTGATCCAAATGAGAAAACCAAATCTGGGAAAGTATTGCCAAAAGCTTACCTGAAGTCTGCAAAGGAGGTGGTGAAGACACTGCGTGAGTC
ATTACAGGAAGATCCCAAGGATCCTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAGTCCATTCGAGACTATTTAAGCAATTGGTTGGGCCAACAAGCAGTTGTTC
AAGAGGAATCTTACGTTGTGCTAGAGAAAGCAATAAGGTCATTAGCCGGCTTTTATGCAAAGGCTGGGCCATCTGCGCCATTGCCAGAAGATGTTAAATCTGATATATTG
AATGATTTGGATAAAGCTGAAGAATTCTTGTAA

mRNA sequence

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Protein sequence

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MCQLSLSYVHFTVLPHSPLAELETSRNFDYRAVCFVSVKPPMHVEICIAFRFLGSDKLRSRSQEVCRRHLLCSGMSLVAFLAFNNGLTPLLARAEEMLNDNGEEENNGVI
ETIKSIFDPNEKTKSGKVLPKAYLKSAKEVVKTLRESLQEDPKDPAKFRRTADAAKESIRDYLSNWLGQQAVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDIL
NDLDKAEEFL

Spg023906 (gene) of Sponge gourd (cylindrica) v1 genome