CuGenDBv2

Gene ID	Spg023963
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Genome location	scaffold13:7803130..7809076
RNA-Seq Expression	Spg023963
Synteny	Spg023963
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4274760.1 unnamed protein product [Prunus armeniaca]

5.1e-14

38.62

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  P    LK+N DA+WSA    G VGWVIRDS G  + AG +   H    +++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++A  ASK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

CAB4274761.1 unnamed protein product [Prunus armeniaca]

5.1e-14

38.62

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  P    LK+N DA+WSA    G VGWVIRDS G  + AG +   H    +++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++A  ASK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

CAB4291403.1 unnamed protein product [Prunus armeniaca]

7.8e-15

38.62

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  PPP  LK+N+DA+WSA    G VGWVIRDS G  + AG +   H    L++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + P SCN+A H++A   SK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

CAB4303756.1 unnamed protein product [Prunus armeniaca]

1.2e-15

39.31

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  PPP  LK+N DA+WSA    G VGWVIRDS G  + AG +   H    +++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++A   SK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

CAB4321714.1 unnamed protein product [Prunus armeniaca]

3.0e-14

38.46

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  PPP  LK+N DA+WSA    G VGWVIRDS    + AG +   H    L++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASK
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++    SK
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASK

TrEMBL top hits

e value

%identity

Alignment

A0A6J5UE59 Reverse transcriptase domain-containing protein

2.5e-14

38.62

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  P    LK+N DA+WSA    G VGWVIRDS G  + AG +   H    +++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++A  ASK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

A0A6J5UF50 Uncharacterized protein

2.5e-14

38.62

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  P    LK+N DA+WSA    G VGWVIRDS G  + AG +   H    +++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++A  ASK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

A0A6J5VSP2 Uncharacterized protein

3.8e-15

38.62

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  PPP  LK+N+DA+WSA    G VGWVIRDS G  + AG +   H    L++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + P SCN+A H++A   SK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

A0A6J5WPU6 Reverse transcriptase domain-containing protein

5.9e-16

39.31

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  PPP  LK+N DA+WSA    G VGWVIRDS G  + AG +   H    +++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++A   SK G
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAG

A0A6J5YDN0 Uncharacterized protein

1.4e-14

38.46

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Query:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD
        +P+SW  PPP  LK+N DA+WSA    G VGWVIRDS    + AG +   H    L++E +A++  L    N      + ++VESDS   I  LN     
Subjt:  SPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASK
         S+ + +  DI +L   L  +S+ + PRSCN+AAH++    SK
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

3.1e-09

26.95

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Query:  VSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLN--DLDPD
        V W  PP   +K N DA+W   +    +GW++R+ SG  ++ G + +     +L  E  A++  +         R   ++ ESD+ +++N LN  D  P 
Subjt:  VSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLN--DLDPD

Query:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEA
        L  A    +DI +L      + + + PR  N+ A  +A+E+
Subjt:  LSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEA

AT3G09510.1 Ribonuclease H-like superfamily protein

1.0e-04

27.01

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Query:  VSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPDLS
        + W  PP + +K N DA +         GW+IR+  G+PI  G   + H    L  E  A+   L+          + + +E D  ++IN +N +    S
Subjt:  VSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSASMINSLNDLDPDLS

Query:  EAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAK
         A  + +DI         I + +  R  N+ AH LAK
Subjt:  EAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAK

Sequences

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CDS sequence

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ATGATTGAATCAGTTAACTTGTGTGTATTTAAATTACTGGAGCTTAGTAGAGTGGAGAGCCTTCGGAGTCCCGTCTCCTGGTCTCCTCCTCCCCCGTCTTCGCTGAAACT
CAATGCAGATGCTTCTTGGAGTGCTGCTTCTGGTATAGGCGATGTGGGATGGGTCATTCGAGACTCCTCAGGATCTCCAATTTTCGCCGGGTTCAAATGCATTCGACATC
CATGGCCGATTCTAGTTCTCGAAGCAATGGCCGTCAAATTGGGTCTGGAGAATTACCGCAATCTTCTCAATGATCGCTCCTCATCGTTGGTGGTGGAATCTGACTCGGCG
TCTATGATCAATTCGTTGAACGACCTAGACCCTGATCTCTCGGAAGCCAAGTTGGTGGCGGACGACATCGTTGAATTAGGAAGAGATTTGGGTTATATTTCATATCGCTG
GTGCCCGAGATCTTGCAACCGGGCGGCTCACGCTCTTGCCAAAGAAGCTTCTAAGGCTGGATCGATTCTTTCTCAATCGTCTGGTCGTTGTAATTTTGATGTTGATTCTT
TTGTTTTTGGGCAGGATCTGCCCTCCTTTGAGGAGGAGTTTGTGTTTTTTGGGTTTCCTGCTAACTGTTCTTCTTTCTCCTTCGTTATTATCGAGGAGTCTGTTTGTACT
TGCATCGTCCCTATGGATACTAGTATCCACACTTTCAACATATACGACAAGGAAACAATTGTGGTACATCCCGGTATATACCCCAGCAAACATCCAGGCAAGATCTTCGT
TCTCAGAAAAGCTTATAATTTGAAACTTGTCTTCACCATTAATAGATCTGTGAAATTTTCTGGTGGTGCAAAGACAGTGGAGATGAAATTTGAATCAGTGCCCAGATGCT
ATTGTATAGGATTGAAACTCGATGGGAAGCCATTACTTAAAAAATTCTGCAAGTTGATGTGCGGCAGTGAGTTGCAGAAGACTGGACGTAGTCCCGAGCTTGGGGCGAAC
CAGTATATTTTTCGGTGTCATGGTAGTTGTAGAGGTACAGTTGAGCCAGCAACAAGGATAGCTAATTTCGATAAGTCCGATCAAGATCCTTCAGTTCAGAAACAATTGGG
AAGTCCAGGAGAGAAAGTTGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCAAATAAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCCAGT
TGCTAAGGTCAAAGGTCAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATTAGAGATAACAGTTGTAGTGGGAGTAGATCCTTGGAAACCTGTAGTTGCAGAAGACTGG
ACGTAG

mRNA sequence

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Protein sequence

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MIESVNLCVFKLLELSRVESLRSPVSWSPPPPSSLKLNADASWSAASGIGDVGWVIRDSSGSPIFAGFKCIRHPWPILVLEAMAVKLGLENYRNLLNDRSSSLVVESDSA
SMINSLNDLDPDLSEAKLVADDIVELGRDLGYISYRWCPRSCNRAAHALAKEASKAGSILSQSSGRCNFDVDSFVFGQDLPSFEEEFVFFGFPANCSSFSFVIIEESVCT
CIVPMDTSIHTFNIYDKETIVVHPGIYPSKHPGKIFVLRKAYNLKLVFTINRSVKFSGGAKTVEMKFESVPRCYCIGLKLDGKPLLKKFCKLMCGSELQKTGRSPELGAN
QYIFRCHGSCRGTVEPATRIANFDKSDQDPSVQKQLGSPGEKVDGYRESPVVRRSNKLKKSLRRVEASKWKAQLLRSKVRYFEPWSLPRRLEITVVVGVDPWKPVVAEDW
T

Spg023963 (gene) of Sponge gourd (cylindrica) v1 genome