; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg023967 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg023967
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold13:1957978..1964261
RNA-Seq ExpressionSpg023967
SyntenySpg023967
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR025558 - Domain of unknown function DUF4283
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]4.9e-1229.38Show/hide
Query:  EEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVYDKAVLAFEDVKGDK
        E+E   + E+ +D I D  +D+++ +  K+LT K V+ E F+ L+ +IW   G+V+++  G+N ++  F +++ +N+V+  GPW++ K+++  E  KG  
Subjt:  EEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVYDKAVLAFEDVKGDK

Query:  EIGKLEF------------------RKYPKALANSVGTFIKTEEEEDGRIWGESLRVKVQ
        +I KL+F                  ++  K LA  +G  ++    E    WG+ +RVKVQ
Subjt:  EIGKLEF------------------RKYPKALANSVGTFIKTEEEEDGRIWGESLRVKVQ

XP_022143536.1 uncharacterized protein LOC111013413 [Momordica charantia]8.8e-1430.58Show/hide
Query:  EEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVY
        +E + + + ++K T+EE+G + ++ +D+I+D  K  + ++ CK+LT K +  E F+ +MP+IW +   V+++  GKN+++CKFK+ + K+++   GP  +
Subjt:  EEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVY

Query:  DKAVLAFEDVKGDKEIGKLEF
        DK+++  E+ + +    +LE+
Subjt:  DKAVLAFEDVKGDKEIGKLEF

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]6.1e-1532.06Show/hide
Query:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV
        +E + +L+ ++K T+EE+        G + ++ +D+I+D  K  + ++ CK+LT K +  E F+ +MP+IW     V+++  GKN+++CKFK+ + K+++
Subjt:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV

Query:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRK
           GPW +DK+++  E+ + +    +LEFRK
Subjt:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRK

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.8e-1228.43Show/hide
Query:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV
        +E + +L+ ++K T+EE+        G + ++ +D+I+D  K  + ++ CK+LT K +  E F+ +MP+IW     V+++  GKN+++CKFK+ + K+++
Subjt:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV

Query:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRKYPKALANSVGTFIKTEEEEDGR-------IW---GESLRVKVQKENNSSNLRAKTTTKDSAKRKGNGSS
           GPW +DK+++  E+ + +    +LEFR              K  EEE  R       IW    +S+   V  E     L       +SA +  N   
Subjt:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRKYPKALANSVGTFIKTEEEEDGR-------IW---GESLRVKVQKENNSSNLRAKTTTKDSAKRKGNGSS

Query:  KSED
        KS+D
Subjt:  KSED

XP_041001644.1 uncharacterized protein LOC121247347 [Juglans microcarpa x Juglans regia]3.4e-1330.59Show/hide
Query:  EERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVYDKAVLAFEDVKGDKE
        +E      V+ ++I+   K  +  +  K LT KGV+ E F+  M +IW +EG V  K+ G+  ++ +F+  + K +V  G PW +D+ +L   +V   + 
Subjt:  EERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVYDKAVLAFEDVKGDKE

Query:  IGKLEFRKYP------------------KALANSVGTFIKTEEEEDGRIWGESLRVKVQKENNSSNLRAK
        I  L+FR  P                  +  A ++G  I+ + EEDGR WG  LRV+V  + N   LR K
Subjt:  IGKLEFRKYP------------------KALANSVGTFIKTEEEEDGRIWGESLRVKVQKENNSSNLRAK

TrEMBL top hitse value%identityAlignment
A0A2I4FHQ1 uncharacterized protein LOC1089988933.4e-1127.42Show/hide
Query:  EEEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWV
        E E++     ++  ++EE      V+   + D  +  +  +  K LT KGV++E F+  M +IW ++G V  K+ G   ++ +F+  + K +V  G PW 
Subjt:  EEEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWV

Query:  YDKAVLAFEDVKGDKEIGKLEF------------------RKYPKALANSVGTFIKTEEEEDGRIWGESLRVKVQKENNSSNLRAK
        +D+ +L   +V   + I  L+F                    + +  A ++G  I+ E E DGR WG  LRV+V  + N   LR K
Subjt:  YDKAVLAFEDVKGDKEIGKLEF------------------RKYPKALANSVGTFIKTEEEEDGRIWGESLRVKVQKENNSSNLRAK

A0A6J1CQJ5 uncharacterized protein LOC1110134134.3e-1430.58Show/hide
Query:  EEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVY
        +E + + + ++K T+EE+G + ++ +D+I+D  K  + ++ CK+LT K +  E F+ +MP+IW +   V+++  GKN+++CKFK+ + K+++   GP  +
Subjt:  EEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVY

Query:  DKAVLAFEDVKGDKEIGKLEF
        DK+++  E+ + +    +LE+
Subjt:  DKAVLAFEDVKGDKEIGKLEF

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.0e-1532.06Show/hide
Query:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV
        +E + +L+ ++K T+EE+        G + ++ +D+I+D  K  + ++ CK+LT K +  E F+ +MP+IW     V+++  GKN+++CKFK+ + K+++
Subjt:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV

Query:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRK
           GPW +DK+++  E+ + +    +LEFRK
Subjt:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRK

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.4e-1228.43Show/hide
Query:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV
        +E + +L+ ++K T+EE+        G + ++ +D+I+D  K  + ++ CK+LT K +  E F+ +MP+IW     V+++  GKN+++CKFK+ + K+++
Subjt:  EEKVLKLLGKMKFTEEER--------GGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRV

Query:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRKYPKALANSVGTFIKTEEEEDGR-------IW---GESLRVKVQKENNSSNLRAKTTTKDSAKRKGNGSS
           GPW +DK+++  E+ + +    +LEFR              K  EEE  R       IW    +S+   V  E     L       +SA +  N   
Subjt:  FEGGPWVYDKAVLAFEDVKGDKEIGKLEFRKYPKALANSVGTFIKTEEEEDGR-------IW---GESLRVKVQKENNSSNLRAKTTTKDSAKRKGNGSS

Query:  KSED
        KS+D
Subjt:  KSED

A0A6J1DU55 uncharacterized protein LOC1110231355.8e-1127.59Show/hide
Query:  EEEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWV
        + E +L    K K T EE    ++V+ D +    + L  ++  K+L  + +SA+   R++   W +E ++ ++  GKN+++  F      NRV + GPW 
Subjt:  EEEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWV

Query:  YDKAVLAFEDVKGDKEIGKLEFRK---------YPKA---------LANSVGTFIKTEEEEDGRIWGESLRVKV
        +DKA++  +     K I +LEF +          P +         L N++G F+  +  E G  WG SLR++V
Subjt:  YDKAVLAFEDVKGDKEIGKLEFRK---------YPKA---------LANSVGTFIKTEEEEDGRIWGESLRVKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGGTAGCGAAGAAGAAAAGGTTCTCAAGTTGCTGGGAAAAATGAAATTCACAGAAGAAGAAAGAGGGGGGCTGGTTGAGGTGGAAGACGATGACATAGACGATAC
GGGGAAGGATTTGGAGAAGACGGTAGCGTGCAAAATCCTAACCTCAAAGGGAGTGAGTGCGGAACACTTTCAGAGGCTTATGCCAAAAATATGGGGGATAGAAGGTAAGG
TTCAGATGAAGAAGTCAGGGAAAAATATATACATTTGCAAATTTAAGAGTCGGAAATCAAAAAACAGAGTATTTGAAGGGGGCCCGTGGGTTTATGATAAGGCAGTGTTG
GCGTTCGAGGATGTCAAAGGAGATAAAGAGATTGGTAAGCTGGAGTTCAGGAAATATCCAAAAGCCCTGGCGAATTCGGTTGGGACATTTATCAAAACTGAAGAAGAAGA
AGACGGCAGGATCTGGGGAGAATCGTTGCGGGTTAAAGTCCAGAAAGAAAATAACAGCAGCAATTTGAGGGCAAAAACCACGACAAAAGATAGCGCGAAGAGGAAAGGAA
ATGGGTCATCTAAGAGTGAAGACGAGGCAGGGGGAAGCTTACCGCCGGAGAACATACAGACGCCGGAAAAACAGAGCATCTTGGAAGCGGTGGAGAGAGAAAAGGACAAA
ATTCCATCATTGCTAGAATTATCGATGTCAGATGGAACAGGGAAAAGAGCCGTTGAGGAAGAGAGAGAAAAGATTGAGCTGGAACAAGATGACTATCTGTCAGGAAAAGA
AGAGGTTGACCAGAGGAACAAAAAGAAAACAAATGGGATTCACGAGAAGTGGGGCCCAGCAAAGGAAAGCAAGGCAAACAGTGGCCAAAACGAAAGTCTGATGCAAGGGG
AAAAGCCTAATGACCAAGAGGAAGGAACTACTGAAGGAAACAAAAATCAAAGGGAAAATTCTGCAAAAAATAACCCCAACCCCAGGAACAAAACTTCTAAGAAATGGAAA
AGACTAGCAAGGAATGAACAGGGGCAGTCGCTGTTGGTGAGTTGGAATTTTAAGGATGAGGCCGTCAGTAATAGGAGGGTTTTTAGGAATTCGAAGGTGTTTCCAGACGA
ACCAGGCGGAACCGGGGCGATCCGGGGCATCAGTGGCCGAAAGGAGGTGAACGAGCTCGGCCCGTTGGAGCGGGCCAAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAC
CATCGTGTTTGGCCGAGGCCGACCATATGGGTCGAGCCATGTTGGCCCGACCCTTTGGTCCCATCTTCCTCTGGGTCGCGAAAGCAAGGGGTGGGATTGGATGGGTTGTT
CGTGATTCAACAGGATCTCCAATCGAATTCGGCTACAAAAAGATCAACCGGCCATGGTCGATCAAGACGATGGAGATGACTGCAATCAGAGAAGGGTTGATGAAATACCT
GGAATCGAGCAGTAAGAAGAAGCCGCCGTTGATCGTGGAATCGGATGCGTCTGAGGTGATCAAAGCTTTAAATTTTGAATGTGAAGAGCTATCGGACTCCAAGTCAGTGA
TGGCCGAAATTGAGCCCCTTGCATCGTCTGCCGGCGTAATCGCGTTCTCAAAATGCCCTAGGGGCGACAACAAGTTCGCGCACTCCCTTGCGCGAGCAACGGCCGGCTAC
ACGCCGGAGACGGATCCTGAGTCTCGTGTTGCTGCTGTTTTAGTTAGAGATGCTTTTGATGAGTTTTGTAACCCTTCTATGCTGGAAGGTGAGTTTTTTTTGGAGGGAGG
ATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGGTAGCGAAGAAGAAAAGGTTCTCAAGTTGCTGGGAAAAATGAAATTCACAGAAGAAGAAAGAGGGGGGCTGGTTGAGGTGGAAGACGATGACATAGACGATAC
GGGGAAGGATTTGGAGAAGACGGTAGCGTGCAAAATCCTAACCTCAAAGGGAGTGAGTGCGGAACACTTTCAGAGGCTTATGCCAAAAATATGGGGGATAGAAGGTAAGG
TTCAGATGAAGAAGTCAGGGAAAAATATATACATTTGCAAATTTAAGAGTCGGAAATCAAAAAACAGAGTATTTGAAGGGGGCCCGTGGGTTTATGATAAGGCAGTGTTG
GCGTTCGAGGATGTCAAAGGAGATAAAGAGATTGGTAAGCTGGAGTTCAGGAAATATCCAAAAGCCCTGGCGAATTCGGTTGGGACATTTATCAAAACTGAAGAAGAAGA
AGACGGCAGGATCTGGGGAGAATCGTTGCGGGTTAAAGTCCAGAAAGAAAATAACAGCAGCAATTTGAGGGCAAAAACCACGACAAAAGATAGCGCGAAGAGGAAAGGAA
ATGGGTCATCTAAGAGTGAAGACGAGGCAGGGGGAAGCTTACCGCCGGAGAACATACAGACGCCGGAAAAACAGAGCATCTTGGAAGCGGTGGAGAGAGAAAAGGACAAA
ATTCCATCATTGCTAGAATTATCGATGTCAGATGGAACAGGGAAAAGAGCCGTTGAGGAAGAGAGAGAAAAGATTGAGCTGGAACAAGATGACTATCTGTCAGGAAAAGA
AGAGGTTGACCAGAGGAACAAAAAGAAAACAAATGGGATTCACGAGAAGTGGGGCCCAGCAAAGGAAAGCAAGGCAAACAGTGGCCAAAACGAAAGTCTGATGCAAGGGG
AAAAGCCTAATGACCAAGAGGAAGGAACTACTGAAGGAAACAAAAATCAAAGGGAAAATTCTGCAAAAAATAACCCCAACCCCAGGAACAAAACTTCTAAGAAATGGAAA
AGACTAGCAAGGAATGAACAGGGGCAGTCGCTGTTGGTGAGTTGGAATTTTAAGGATGAGGCCGTCAGTAATAGGAGGGTTTTTAGGAATTCGAAGGTGTTTCCAGACGA
ACCAGGCGGAACCGGGGCGATCCGGGGCATCAGTGGCCGAAAGGAGGTGAACGAGCTCGGCCCGTTGGAGCGGGCCAAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAC
CATCGTGTTTGGCCGAGGCCGACCATATGGGTCGAGCCATGTTGGCCCGACCCTTTGGTCCCATCTTCCTCTGGGTCGCGAAAGCAAGGGGTGGGATTGGATGGGTTGTT
CGTGATTCAACAGGATCTCCAATCGAATTCGGCTACAAAAAGATCAACCGGCCATGGTCGATCAAGACGATGGAGATGACTGCAATCAGAGAAGGGTTGATGAAATACCT
GGAATCGAGCAGTAAGAAGAAGCCGCCGTTGATCGTGGAATCGGATGCGTCTGAGGTGATCAAAGCTTTAAATTTTGAATGTGAAGAGCTATCGGACTCCAAGTCAGTGA
TGGCCGAAATTGAGCCCCTTGCATCGTCTGCCGGCGTAATCGCGTTCTCAAAATGCCCTAGGGGCGACAACAAGTTCGCGCACTCCCTTGCGCGAGCAACGGCCGGCTAC
ACGCCGGAGACGGATCCTGAGTCTCGTGTTGCTGCTGTTTTAGTTAGAGATGCTTTTGATGAGTTTTGTAACCCTTCTATGCTGGAAGGTGAGTTTTTTTTGGAGGGAGG
ATAG
Protein sequenceShow/hide protein sequence
MQGSEEEKVLKLLGKMKFTEEERGGLVEVEDDDIDDTGKDLEKTVACKILTSKGVSAEHFQRLMPKIWGIEGKVQMKKSGKNIYICKFKSRKSKNRVFEGGPWVYDKAVL
AFEDVKGDKEIGKLEFRKYPKALANSVGTFIKTEEEEDGRIWGESLRVKVQKENNSSNLRAKTTTKDSAKRKGNGSSKSEDEAGGSLPPENIQTPEKQSILEAVEREKDK
IPSLLELSMSDGTGKRAVEEEREKIELEQDDYLSGKEEVDQRNKKKTNGIHEKWGPAKESKANSGQNESLMQGEKPNDQEEGTTEGNKNQRENSAKNNPNPRNKTSKKWK
RLARNEQGQSLLVSWNFKDEAVSNRRVFRNSKVFPDEPGGTGAIRGISGRKEVNELGPLERAKWSASAFCRGRPSCLAEADHMGRAMLARPFGPIFLWVAKARGGIGWVV
RDSTGSPIEFGYKKINRPWSIKTMEMTAIREGLMKYLESSSKKKPPLIVESDASEVIKALNFECEELSDSKSVMAEIEPLASSAGVIAFSKCPRGDNKFAHSLARATAGY
TPETDPESRVAAVLVRDAFDEFCNPSMLEGEFFLEGG