; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024007 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024007
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold13:8558854..8559730
RNA-Seq ExpressionSpg024007
SyntenySpg024007
Gene Ontology termsGO:0006275 - regulation of DNA replication (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0030337 - DNA polymerase processivity factor activity (molecular function)
InterPro domainsIPR000730 - Proliferating cell nuclear antigen, PCNA
IPR022648 - Proliferating cell nuclear antigen, PCNA, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026022.1 hypothetical protein SDJN02_12520, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-3649.18Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        M  I + PV P   A+SPLT+I+TQAD+  SP    +TV Q+ PR + +LQLT   F+SFLVT+NL ARI LD+FH+TL++A+   A++IN +E    LL
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        L  EN+    + R+ LELLP E  + D+  IDFTN VSI   +F RIV  ELSV+Y+DR+C+T + SQ+K + G K+ IL++E
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]7.5e-2841.53Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF++R+K   P F+A S L +I+ +AD+KF+P    I     SPR VA LQ+T   F ++ V  + T+RI+L++FH  L+     P++TI+ L N   L+
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFE+S + P    EL L PS+EE  D+ ++D+    SIDS +  R++++ L + + D ICVT T SQVKF+  +KE++L+KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]2.7e-3854.1Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF+IR++P+ P F+AI  LTRI+T+AD+KFSP +  I V Q SP  +A LQ++ + F+SF V  N T+RI LD+ HS LM    YPA+T + LEN+  LL
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFENS+N P  R EL+L PSEEE  DV +ID+ N VSI S EF  IV  +LS  +  RIC TLT+SQVKF+   +E+IL+KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

XP_023000630.1 uncharacterized protein LOC111494874 [Cucurbita maxima]1.8e-2134.97Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF++R+K   P  +  S L +I+ ++D+ F+P  L++T  + SPR +A LQ+  Q F+ + V  +  +RI+L++ H  L+   +  A+TI+ LEN   ++
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFE   + P  R +  LLP +E+ ++  +I+++ S+++DS + LR V  EL + + D +CVT+T+S+V+F+  ++E+I  KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]2.2e-2742.62Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF++R+K   PFF A S L  I+ +AD+KF+P    ITV    PR VA L +T   F ++ V  + T+RI+L++FH  L+     P++TI+ L N   ++
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFE+S + P  R EL L PS+EE  D+ +ID+    SIDS    R++++ L + + D ICVT T SQVKF+  +KE++L+KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.9e-2135.87Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF++R++   P  +A S L +++  AD+KF+P  L I V   SP+ VA LQL+ + F++F V  N +++++L  FH  ++   ++ ++TI+ L+    ++
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFEN-SKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFE  S + P    EL L P + E  ++ ++++ N  ++ S E  RI++ EL + +QD + VT+T SQVKF+  +KE+IL+KE
Subjt:  LRFEN-SKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

A0A1S4E4N8 uncharacterized protein LOC1035022633.6e-2841.53Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF++R+K   P F+A S L +I+ +AD+KF+P    I     SPR VA LQ+T   F ++ V  + T+RI+L++FH  L+     P++TI+ L N   L+
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFE+S + P    EL L PS+EE  D+ ++D+    SIDS +  R++++ L + + D ICVT T SQVKF+  +KE++L+KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

A0A6J1CUU8 uncharacterized protein LOC1110149881.3e-3854.1Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF+IR++P+ P F+AI  LTRI+T+AD+KFSP +  I V Q SP  +A LQ++ + F+SF V  N T+RI LD+ HS LM    YPA+T + LEN+  LL
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFENS+N P  R EL+L PSEEE  DV +ID+ N VSI S EF  IV  +LS  +  RIC TLT+SQVKF+   +E+IL+KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

A0A6J1KE78 uncharacterized protein LOC1114941891.2e-2050Show/hide
Query:  VTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLLLRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC
        VT+NL ARI LD+FH+TL++A+   A++IN LE    LLL  EN+    + R+ L+LLP E  + D+  IDFTN VSI   +F RIV  ELSV+YQDR+C
Subjt:  VTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLLLRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRIC

Query:  VTLTNSQVKFTAGAKEVILSKE
        +T + SQ+K + G K+ IL++E
Subjt:  VTLTNSQVKFTAGAKEVILSKE

A0A6J1KIW5 uncharacterized protein LOC1114948748.6e-2234.97Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        MF++R+K   P  +  S L +I+ ++D+ F+P  L++T  + SPR +A LQ+  Q F+ + V  +  +RI+L++ H  L+   +  A+TI+ LEN   ++
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE
        LRFE   + P  R +  LLP +E+ ++  +I+++ S+++DS + LR V  EL + + D +CVT+T+S+V+F+  ++E+I  KE
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE

SwissProt top hitse value%identityAlignment
Q9VIT0 Proliferating cell nuclear antigen 24.9e-0623.7Show/hide
Query:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL
        M   R+   +   + +  L  I  Q  L  S   L +    +S   +  L L S  F  F   RN++  ++L +    L  AN+  A+TI  ++    + 
Subjt:  MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLL

Query:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTA
        L FE+         EL+LL  +++ +++ K D+T  + + S+EF RI +D     + + + +  ++  ++F A
Subjt:  LRFENSKNRPVWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATCATAAGGGTTAAGCCTGTGATTCCTTTCTTCGAAGCAATATCCCCTCTGACTCGAATTTCAACACAAGCCGACTTGAAATTCTCTCCACAGGAGTTGAGGAT
AACGGTGTTCCAACATTCCCCTCGCTTGGTCGCAATGCTTCAACTGACGTCTCAACACTTCAGCTCCTTTTTGGTCACTCGAAATCTCACTGCCAGAATTAACCTCGACA
CCTTCCACTCCACATTGATGGCAGCCAACAATTACCCTGCAATAACCATCAATTTTCTCGAAAACAAAATGAGCCTCCTCCTCAGATTTGAGAATTCAAAGAATCGACCA
GTGTGGCGTGAGGAATTGGAACTGTTGCCTTCAGAAGAGGAGGAGGTAGACGTGAGTAAAATTGACTTTACAAACAGTGTCTCAATTGATTCAACAGAGTTTCTACGCAT
TGTACAAGACGAGCTATCTGTCACCTACCAAGATAGAATTTGTGTCACACTAACGAATTCTCAAGTCAAGTTCACCGCTGGAGCTAAAGAGGTTATCCTTTCCAAAGAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATCATAAGGGTTAAGCCTGTGATTCCTTTCTTCGAAGCAATATCCCCTCTGACTCGAATTTCAACACAAGCCGACTTGAAATTCTCTCCACAGGAGTTGAGGAT
AACGGTGTTCCAACATTCCCCTCGCTTGGTCGCAATGCTTCAACTGACGTCTCAACACTTCAGCTCCTTTTTGGTCACTCGAAATCTCACTGCCAGAATTAACCTCGACA
CCTTCCACTCCACATTGATGGCAGCCAACAATTACCCTGCAATAACCATCAATTTTCTCGAAAACAAAATGAGCCTCCTCCTCAGATTTGAGAATTCAAAGAATCGACCA
GTGTGGCGTGAGGAATTGGAACTGTTGCCTTCAGAAGAGGAGGAGGTAGACGTGAGTAAAATTGACTTTACAAACAGTGTCTCAATTGATTCAACAGAGTTTCTACGCAT
TGTACAAGACGAGCTATCTGTCACCTACCAAGATAGAATTTGTGTCACACTAACGAATTCTCAAGTCAAGTTCACCGCTGGAGCTAAAGAGGTTATCCTTTCCAAAGAG
Protein sequenceShow/hide protein sequence
MFIIRVKPVIPFFEAISPLTRISTQADLKFSPQELRITVFQHSPRLVAMLQLTSQHFSSFLVTRNLTARINLDTFHSTLMAANNYPAITINFLENKMSLLLRFENSKNRP
VWREELELLPSEEEEVDVSKIDFTNSVSIDSTEFLRIVQDELSVTYQDRICVTLTNSQVKFTAGAKEVILSKE