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Spg024059 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024059
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022231
Genome locationscaffold13:9969168..9970258
RNA-Seq ExpressionSpg024059
SyntenySpg024059
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147190.1 uncharacterized protein LOC111016201 [Momordica charantia]7.6e-0549.32Show/hide
Query:  LSKVITPTQPNRKNVFKTR-----IMEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDP
        L K+     P+R   ++TR     +ME+Q  E EK RKDIEELREK+D IL+ALE+GK   D A SSN +++P
Subjt:  LSKVITPTQPNRKNVFKTR-----IMEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDP

XP_022149382.1 uncharacterized protein LOC111017812 [Momordica charantia]1.4e-0647.62Show/hide
Query:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMN------------DPPIRQSTEG---TTPKYHPLYNIPV
        M++Q  E EKIRKDIEELREK+D IL+ALE+GK + D   SSN ++            DPP+R   EG       Y+PLY+I V
Subjt:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMN------------DPPIRQSTEG---TTPKYHPLYNIPV

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.6e-0551.61Show/hide
Query:  EEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP
        +++ +E EK RKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.1e-0645.24Show/hide
Query:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPV
        ME+Q  E EK RKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y+PLY++P+
Subjt:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPV

TrEMBL top hitse value%identityAlignment
A0A5A7T1W2 Retrotrans_gag domain-containing protein6.9e-0426.6Show/hide
Query:  MHRLRRDNEVSQATLKSRNDQVLKQQSEIASLQELMKELEDCISLRNQTITEDATDRLMKDYTYLKEQYDRLSDDFGFARQNHATLRSKAEHMLTQIRRV
        M++  R  +  + TL++     LK  +E +   +++K   D +  +  T  ++++ R+ ++Y  L   Y ++  D+    ++   L  + +  +  +R V
Subjt:  MHRLRRDNEVSQATLKSRNDQVLKQQSEIASLQELMKELEDCISLRNQTITEDATDRLMKDYTYLKEQYDRLSDDFGFARQNHATLRSKAEHMLTQIRRV

Query:  TRRADELAEDARTLSKVITPTQPNRKNVFKTRIMEEQSTEMEKIRKDIEELREKMDAI--LVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHPLY
        ++RA+  AE A   S   TP +      +K++IMEE+  +M+K+R++I  L E++  I  L+++ +GK   D  QSSN + D        G TP YH   
Subjt:  TRRADELAEDARTLSKVITPTQPNRKNVFKTRIMEEQSTEMEKIRKDIEELREKMDAI--LVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHPLY

Query:  NIP
        N+P
Subjt:  NIP

A0A6J1CZG4 uncharacterized protein LOC1110162013.7e-0549.32Show/hide
Query:  LSKVITPTQPNRKNVFKTR-----IMEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDP
        L K+     P+R   ++TR     +ME+Q  E EK RKDIEELREK+D IL+ALE+GK   D A SSN +++P
Subjt:  LSKVITPTQPNRKNVFKTR-----IMEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDP

A0A6J1D7T3 uncharacterized protein LOC1110178126.7e-0747.62Show/hide
Query:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMN------------DPPIRQSTEG---TTPKYHPLYNIPV
        M++Q  E EKIRKDIEELREK+D IL+ALE+GK + D   SSN ++            DPP+R   EG       Y+PLY+I V
Subjt:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMN------------DPPIRQSTEG---TTPKYHPLYNIPV

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.3e-0551.61Show/hide
Query:  EEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP
        +++ +E EK RKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P + P
Subjt:  EEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHP

A0A6J1DZ90 Ribonuclease H5.1e-0745.24Show/hide
Query:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPV
        ME+Q  E EK RKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y+PLY++P+
Subjt:  MEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YHPLYNIPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTCCAAGAGTTGATGAA
AGAGCTCGAAGATTGCATTAGTTTGAGGAACCAAACGATTACTGAGGATGCCACTGACAGATTAATGAAAGACTATACCTATTTAAAGGAGCAGTACGACAGATTAAGCG
ATGATTTTGGGTTTGCGAGACAGAACCACGCGACACTACGAAGTAAAGCGGAACATATGCTCACTCAAATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGAT
GCACGTACTCTCTCTAAAGTCATAACACCTACACAGCCGAATAGAAAGAATGTGTTCAAGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAATAAGGAAAGA
TATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCC
GGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTCCAAGAGTTGATGAA
AGAGCTCGAAGATTGCATTAGTTTGAGGAACCAAACGATTACTGAGGATGCCACTGACAGATTAATGAAAGACTATACCTATTTAAAGGAGCAGTACGACAGATTAAGCG
ATGATTTTGGGTTTGCGAGACAGAACCACGCGACACTACGAAGTAAAGCGGAACATATGCTCACTCAAATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGAT
GCACGTACTCTCTCTAAAGTCATAACACCTACACAGCCGAATAGAAAGAATGTGTTCAAGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAATAAGGAAAGA
TATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCC
GGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGTAG
Protein sequenceShow/hide protein sequence
MHRLRRDNEVSQATLKSRNDQVLKQQSEIASLQELMKELEDCISLRNQTITEDATDRLMKDYTYLKEQYDRLSDDFGFARQNHATLRSKAEHMLTQIRRVTRRADELAED
ARTLSKVITPTQPNRKNVFKTRIMEEQSTEMEKIRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYHPLYNIPVE