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Spg024079 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024079
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein cornichon 4-like
Genome locationscaffold13:7647875..7649955
RNA-Seq ExpressionSpg024079
SyntenySpg024079
Gene Ontology termsGO:0016192 - vesicle-mediated transport (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR003377 - Cornichon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008375821.1 protein cornichon homolog 4-like [Malus domestica]5.4e-3161.11Show/hide
Query:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL
        ++CLVDLE DYIN +DS+SRIN V++ EFI Q V CF+ L+ARHWFM  ++LP L +NV LY+   HL DVTEIYNQ+ WEKKQRFLK+ Y + L  +SL
Subjt:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL

Query:  IWLIWSVG
         WL+WS+G
Subjt:  IWLIWSVG

XP_008460127.1 PREDICTED: protein cornichon homolog 4-like isoform X1 [Cucumis melo]5.7e-4175.97Show/hide
Query:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY
        DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIY
Subjt:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY

Query:  NQIGWEKKQRFLKMMYFITLLFISLIWLI
        N IG EKKQRFLK++YF+ LLFISLIW I
Subjt:  NQIGWEKKQRFLKMMYFITLLFISLIWLI

XP_008460129.1 PREDICTED: protein cornichon homolog 4-like isoform X2 [Cucumis melo]2.4e-4776.6Show/hide
Query:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY
        DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIY
Subjt:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY

Query:  NQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS
        N IG EKKQRFLK++YF+ LLFISLIW I  VGALEKNWDS
Subjt:  NQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS

XP_022152825.1 protein cornichon homolog 4-like isoform X1 [Momordica charantia]1.6e-5178.83Show/hide
Query:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI
        +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQI
Subjt:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI

Query:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD
        GWEKKQRF+KM+YFI L FISLIW+I SVGALEKNWD
Subjt:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD

XP_022152838.1 protein cornichon homolog 4-like isoform X2 [Momordica charantia]3.4e-4169.34Show/hide
Query:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI
        +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQI
Subjt:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI

Query:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD
        GWEKKQR                 +I SVGALEKNWD
Subjt:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD

TrEMBL top hitse value%identityAlignment
A0A1S3CBU0 protein cornichon homolog 4-like isoform X12.8e-4175.97Show/hide
Query:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY
        DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIY
Subjt:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY

Query:  NQIGWEKKQRFLKMMYFITLLFISLIWLI
        N IG EKKQRFLK++YF+ LLFISLIW I
Subjt:  NQIGWEKKQRFLKMMYFITLLFISLIWLI

A0A1S3CD35 protein cornichon homolog 4-like isoform X21.2e-4776.6Show/hide
Query:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY
        DLF   FN + ++ L V   Y+   IICLVDLE DYINLFDSTSRINRVVMLEFI Q VF FVHLLARHWFMFLVSLPCL FNV+LYIR EHLADVTEIY
Subjt:  DLF---FNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIY

Query:  NQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS
        N IG EKKQRFLK++YF+ LLFISLIW I  VGALEKNWDS
Subjt:  NQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS

A0A540MX74 Uncharacterized protein2.6e-3161.11Show/hide
Query:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL
        ++CLVDLE DYIN +DS+SRIN V++ EFI Q V CF+ L+ARHWFM  ++LP L +NV LY+   HL DVTEIYNQ+ WEKKQRFLK+ Y + L  +SL
Subjt:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL

Query:  IWLIWSVG
         WL+WS+G
Subjt:  IWLIWSVG

A0A6J1DF23 protein cornichon homolog 4-like isoform X17.8e-5278.83Show/hide
Query:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI
        +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQI
Subjt:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI

Query:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD
        GWEKKQRF+KM+YFI L FISLIW+I SVGALEKNWD
Subjt:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD

A0A6J1DFZ1 protein cornichon homolog 4-like isoform X21.6e-4169.34Show/hide
Query:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI
        +LF     +LILG    Y+    ICLVDLE DYINLFDSTSRINRVV+LEF+AQAVFCFVHLLARHWFMFLVSLPCLCFN++LY+R EHLADVTEIYNQI
Subjt:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI

Query:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD
        GWEKKQR                 +I SVGALEKNWD
Subjt:  GWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWD

SwissProt top hitse value%identityAlignment
Q3EDD7 Probable protein cornichon homolog 22.4e-2652.83Show/hide
Query:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL
        ++CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++
Subjt:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL

Query:  IWLIWS
         W+I+S
Subjt:  IWLIWS

Q84W04 Protein cornichon homolog 46.4e-2751.24Show/hide
Query:  FVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQR
        F LI  VG +  ++V  CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R
Subjt:  FVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQR

Query:  FLKMMYFITLLFISLIWLIWS
          K+ Y +  LF+++ W+I+S
Subjt:  FLKMMYFITLLFISLIWLIWS

Q8GWT5 Protein cornichon homolog 31.9e-2351.89Show/hide
Query:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL
        +I L DLE DYIN +DS SRIN VV+ E I Q   C  +L+  HWFM L+ +P L +N  LY R +HL DVTEI+N + WEKK+R  K+ Y I  LF+++
Subjt:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL

Query:  IWLIWS
         WLI+S
Subjt:  IWLIWS

Q9C7D7 Protein cornichon homolog 11.2e-1739.84Show/hide
Query:  LFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIG
        L+    FV +  V  V+ +  +ICL DLE DY+N F++++RINR+V+ EFI Q   C + LL  HW  FLV++P   ++  LY    +L DVTE++  I 
Subjt:  LFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIG

Query:  WEKKQRFLKMMYFITLLFISLIW
        +EKK R+ K+ +++  LFI +++
Subjt:  WEKKQRFLKMMYFITLLFISLIW

Q9SZ74 Protein cornichon homolog 52.8e-2243.75Show/hide
Query:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI
        D   + +F+  L +  +Y+   + CL DLE D IN +D +SRINR+V+ EF  Q + C  ++L  HWFM ++SLP L +N++LY++ EHLADVTE+YN  
Subjt:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI

Query:  GWEKKQRFLKMMYFITLLFISLIWLIWS
         WE+K+R  K+ +    +FI+  WLI S
Subjt:  GWEKKQRFLKMMYFITLLFISLIWLIWS

Arabidopsis top hitse value%identityAlignment
AT1G12340.1 Cornichon family protein1.7e-2752.83Show/hide
Query:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL
        ++CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R  K+ Y +  LF+++
Subjt:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL

Query:  IWLIWS
         W+I+S
Subjt:  IWLIWS

AT1G12390.1 Cornichon family protein4.5e-2851.24Show/hide
Query:  FVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQR
        F LI  VG +  ++V  CL DLE DYIN +DS SRIN VV+ EFI Q V C  +LL  HWFM L+ LP L +N  LY + +HL DVTEI+N + WEKK+R
Subjt:  FVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQR

Query:  FLKMMYFITLLFISLIWLIWS
          K+ Y +  LF+++ W+I+S
Subjt:  FLKMMYFITLLFISLIWLIWS

AT1G62880.1 Cornichon family protein1.4e-2451.89Show/hide
Query:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL
        +I L DLE DYIN +DS SRIN VV+ E I Q   C  +L+  HWFM L+ +P L +N  LY R +HL DVTEI+N + WEKK+R  K+ Y I  LF+++
Subjt:  IICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISL

Query:  IWLIWS
         WLI+S
Subjt:  IWLIWS

AT3G12180.1 Cornichon family protein8.6e-1939.84Show/hide
Query:  LFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIG
        L+    FV +  V  V+ +  +ICL DLE DY+N F++++RINR+V+ EFI Q   C + LL  HW  FLV++P   ++  LY    +L DVTE++  I 
Subjt:  LFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQIG

Query:  WEKKQRFLKMMYFITLLFISLIW
        +EKK R+ K+ +++  LFI +++
Subjt:  WEKKQRFLKMMYFITLLFISLIW

AT4G12090.1 Cornichon family protein2.0e-2343.75Show/hide
Query:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI
        D   + +F+  L +  +Y+   + CL DLE D IN +D +SRINR+V+ EF  Q + C  ++L  HWFM ++SLP L +N++LY++ EHLADVTE+YN  
Subjt:  DLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMFLVSLPCLCFNVKLYIRNEHLADVTEIYNQI

Query:  GWEKKQRFLKMMYFITLLFISLIWLIWS
         WE+K+R  K+ +    +FI+  WLI S
Subjt:  GWEKKQRFLKMMYFITLLFISLIWLIWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGTTTACTTCATTTACTTTCTGATGATTG
TCGAACTTCCGATCTTTTTTTTAATCATATGTTCGTCTTGATTCTTGGAGTAGGGGAAGTGTACAGAGAGATAGTGATTATATGCTTGGTGGATTTGGAGTGTGACTATA
TCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTT
TTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACG
TTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGGAGCCATGGAAGACGTCTTTGCTTCGCTCTTCAACTTATTCCTCCTTATATTTCTCATTCCCATTCTCGGCTATCAGTTTACTTCATTTACTTTCTGATGATTG
TCGAACTTCCGATCTTTTTTTTAATCATATGTTCGTCTTGATTCTTGGAGTAGGGGAAGTGTACAGAGAGATAGTGATTATATGCTTGGTGGATTTGGAGTGTGACTATA
TCAATCTCTTCGATTCGACCTCTCGGATAAACAGAGTTGTAATGTTGGAATTTATTGCCCAGGCAGTTTTCTGCTTCGTTCATCTTCTAGCACGCCACTGGTTTATGTTT
TTGGTGTCTCTTCCATGCCTATGCTTTAATGTCAAACTGTATATCAGGAATGAACACCTTGCAGATGTGACTGAGATCTATAACCAGATTGGCTGGGAGAAAAAGCAACG
TTTTCTGAAGATGATGTATTTTATTACACTTTTATTCATTTCTTTGATATGGCTGATTTGGAGCGTAGGAGCCTTGGAGAAGAACTGGGATAGTTAG
Protein sequenceShow/hide protein sequence
MREPWKTSLLRSSTYSSLYFSFPFSAISLLHLLSDDCRTSDLFFNHMFVLILGVGEVYREIVIICLVDLECDYINLFDSTSRINRVVMLEFIAQAVFCFVHLLARHWFMF
LVSLPCLCFNVKLYIRNEHLADVTEIYNQIGWEKKQRFLKMMYFITLLFISLIWLIWSVGALEKNWDS