; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024083 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024083
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein PXR1
Genome locationscaffold13:7890254..7891281
RNA-Seq ExpressionSpg024083
SyntenySpg024083
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040007.1 protein PXR1 [Cucumis melo var. makuwa]7.6e-5585.91Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKGMRRRERNYRAAHGGYDRLPPPPD S+ D LPSKLRKLMSFTS R QESE VSEDIQRKRKR+A+NTEKKS+ KDA GRSDVKSKANGG SQMPQ 
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSD-DDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSD DDVQSKSSEKKNKKRKR QVTDLRFE SLE+S+RRLKK+ERRKK
Subjt:  SGSD-DDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

KAG6574789.1 hypothetical protein SDJN03_25428, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5682.43Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKREA++TEKK HPK+A G+SD+KS+ NGG SQMPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSKSSEKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER++K
Subjt:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

XP_022959194.1 uncharacterized protein LOC111460256 [Cucurbita moschata]1.1e-5683.11Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKREA++TEKK HPK+A G+SD+KSK NGG SQMPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSK SEKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

XP_023006093.1 probable H/ACA ribonucleoprotein complex subunit 4 [Cucurbita maxima]5.2e-5683.22Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALN-TEKKSHPKDALGRSDVKSKANGGRSQMPQ
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLMSFTSPRPQESEKVSED+QRKRKREA++ TEKK HPK+A G+SD+KSK NGG SQMPQ
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALN-TEKKSHPKDALGRSDVKSKANGGRSQMPQ

Query:  LSGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        L+GSDDDVQSKS+EKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  LSGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

XP_023547832.1 protein PXR1 [Cucurbita pepo subsp. pepo]1.2e-5581.76Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKREA++TEKK HPK+A G+SD+KSK +GG SQ+PQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSKSSEKK KKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

TrEMBL top hitse value%identityAlignment
A0A1S4E2Q2 LOW QUALITY PROTEIN: protein PXR18.2e-5585.23Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKGMRRRERNYRAAHGGYDRLPPPPD S+ D LPSKLRKLMSFTS R QESE VSED+QRKRKR+A NTEKKS+ KDA GRSDVKSKANGG SQMPQ 
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSD-DDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSD DDVQSKSSEKKNKKRKR QVTDLRFE SLE+S+RRLKK+ERRKK
Subjt:  SGSD-DDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

A0A5A7TEP7 Protein PXR13.7e-5585.91Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKGMRRRERNYRAAHGGYDRLPPPPD S+ D LPSKLRKLMSFTS R QESE VSEDIQRKRKR+A+NTEKKS+ KDA GRSDVKSKANGG SQMPQ 
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSD-DDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSD DDVQSKSSEKKNKKRKR QVTDLRFE SLE+S+RRLKK+ERRKK
Subjt:  SGSD-DDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

A0A6J1DLN3 DNA ligase 17.9e-5076.35Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKG RRRERNYRAAHG YDRLPPPPD+SK+DALPSKLRKLMSFTS R QESEKV +D Q KRK+EA+++EKKSHP+DA GR+DVK++ NGG S+MPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        + S DD+QSKSSEKK+KKRKR QV DLRFE    +SNRRLKK+ERRKK
Subjt:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

A0A6J1H3V7 uncharacterized protein LOC1114602565.1e-5783.11Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLM+FTSPRPQESEKVSED+QRKRKREA++TEKK HPK+A G+SD+KSK NGG SQMPQL
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        +GSDDDVQSK SEKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

A0A6J1KUZ8 probable H/ACA ribonucleoprotein complex subunit 42.5e-5683.22Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALN-TEKKSHPKDALGRSDVKSKANGGRSQMPQ
        MGGKG+RRRERNYRAAHGGYDRLPPPP+AS+VD LPSKLRKLMSFTSPRPQESEKVSED+QRKRKREA++ TEKK HPK+A G+SD+KSK NGG SQMPQ
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALN-TEKKSHPKDALGRSDVKSKANGGRSQMPQ

Query:  LSGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        L+GSDDDVQSKS+EKKNKKRK+ QVTDLRFE   E+SNRRLKK+ER+KK
Subjt:  LSGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45520.1 unknown protein3.2e-1946.62Show/hide
Query:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL
        MGGKG +RRE+NY AAHGG  RLPPPPD SK D +PS LR LM++TSP P +S K  + +++K K               L +++V   A          
Subjt:  MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQL

Query:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK
        S  DD V     EKK KKRKR Q+TDLRFE  L + + R K+KER+KK
Subjt:  SGSDDDVQSKSSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGCAAAGGAATGCGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTACGATCGTCTCCCACCGCCGCCGGACGCTTCCAAAGTCGATGCTCTACCTTC
CAAACTCCGCAAGTTAATGTCCTTCACTTCCCCTCGACCTCAAGAGTCTGAGAAGGTCTCGGAGGATATTCAGCGAAAGCGCAAGAGAGAAGCCCTTAATACTGAAAAGA
AATCCCATCCAAAGGATGCTCTGGGAAGATCTGACGTAAAAAGCAAAGCTAATGGTGGGAGATCACAGATGCCTCAGCTTTCAGGTAGTGATGATGACGTGCAAAGCAAG
TCCAGTGAGAAGAAGAACAAAAAACGAAAGAGAACTCAGGTTACTGATCTTCGTTTCGAAGCCTCGTTGGAGGATTCCAATCGGCGTTTAAAGAAGAAGGAACGCCGGAA
AAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGCAAAGGAATGCGGAGGAGAGAGCGGAATTACAGAGCCGCACATGGAGGCTACGATCGTCTCCCACCGCCGCCGGACGCTTCCAAAGTCGATGCTCTACCTTC
CAAACTCCGCAAGTTAATGTCCTTCACTTCCCCTCGACCTCAAGAGTCTGAGAAGGTCTCGGAGGATATTCAGCGAAAGCGCAAGAGAGAAGCCCTTAATACTGAAAAGA
AATCCCATCCAAAGGATGCTCTGGGAAGATCTGACGTAAAAAGCAAAGCTAATGGTGGGAGATCACAGATGCCTCAGCTTTCAGGTAGTGATGATGACGTGCAAAGCAAG
TCCAGTGAGAAGAAGAACAAAAAACGAAAGAGAACTCAGGTTACTGATCTTCGTTTCGAAGCCTCGTTGGAGGATTCCAATCGGCGTTTAAAGAAGAAGGAACGCCGGAA
AAAGTAA
Protein sequenceShow/hide protein sequence
MGGKGMRRRERNYRAAHGGYDRLPPPPDASKVDALPSKLRKLMSFTSPRPQESEKVSEDIQRKRKREALNTEKKSHPKDALGRSDVKSKANGGRSQMPQLSGSDDDVQSK
SSEKKNKKRKRTQVTDLRFEASLEDSNRRLKKKERRKK