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Spg024090 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024090
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold13:10992937..10996483
RNA-Seq ExpressionSpg024090
SyntenySpg024090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4375842.1 hypothetical protein G4B88_026421 [Cannabis sativa]3.2e-1133.33Show/hide
Query:  TYLMHYVSCHFCLL-SPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAID-TPN
        T L   + C +  + S +LPT+HDSTVSRER+ + + I++   I+VGKVIA EIF C  +  GKLFF   IT  C+   VP  +++  +  KG +   P+
Subjt:  TYLMHYVSCHFCLL-SPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAID-TPN

Query:  LARLQRTQEVRQGGLVCGVHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANF
         A  + T              + E+L+   + Q+    +  T WNY + RD  + + L+ N+
Subjt:  LARLQRTQEVRQGGLVCGVHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANF

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]3.3e-1636.07Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q
        HF L S +LPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+      +
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q

Query:  RTQEV-----------RQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF
         TQ+            R  G +      LEQ       Q++          +Q    W Y K RD AL+KALQ NF++P P F
Subjt:  RTQEV-----------RQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]3.3e-1636.07Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q
        HF L S +LPTTH  TVS++R+LL +++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L   G ID   +AR+      +
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q

Query:  RTQE-----------VRQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF
         TQ+            R  G +      LEQ       Q++          +Q    W Y K RD AL+KALQ NF++P P F
Subjt:  RTQE-----------VRQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]2.0e-1637.79Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q
        HF L S +LPTTH   VS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+      +
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q

Query:  RTQEVRQGGLVCG--------VHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANFSKPYPAF
         TQ+                 V   L+ L    S+QE   +Q    W Y K RD AL+KALQ NF++P P F
Subjt:  RTQEVRQGGLVCG--------VHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANFSKPYPAF

XP_024971944.1 uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]2.5e-1133.11Show/hide
Query:  PTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILL---DKGAIDTPNLARLQRTQEVRQGGLVC
        PTTHDS++S E+++L + ++   +I+VGKV+   I  C +++ GKLFFP+ I  L  + GVPE ++D+++    +K  ID   +++L+   E  +G  + 
Subjt:  PTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILL---DKGAIDTPNLARLQRTQEVRQGGLVC

Query:  GVHHILEQ-LALSASRQEFAERQAHTLWNYVKRRDAALRKALQANFSK
        GV   +E+ L  S S  +F   Q   +   +K   A L   L+A+  K
Subjt:  GVHHILEQ-LALSASRQEFAERQAHTLWNYVKRRDAALRKALQANFSK

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)8.6e-1044.9Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARLQRTQE
        HF L S +LPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+  TQE
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARLQRTQE

A0A2P5BCG4 Uncharacterized protein (Fragment)1.6e-1636.07Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q
        HF L S +LPTTH  TVS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+      +
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q

Query:  RTQEV-----------RQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF
         TQ+            R  G +      LEQ       Q++          +Q    W Y K RD AL+KALQ NF++P P F
Subjt:  RTQEV-----------RQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF

A0A2P5CEY2 Uncharacterized protein1.6e-1636.07Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q
        HF L S +LPTTH  TVS++R+LL +++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L   G ID   +AR+      +
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q

Query:  RTQE-----------VRQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF
         TQ+            R  G +      LEQ       Q++          +Q    W Y K RD AL+KALQ NF++P P F
Subjt:  RTQE-----------VRQGGLVCGVHHILEQLALSASRQEF--------AERQAHTLWNYVKRRDAALRKALQANFSKPYPAF

A0A2P5DXM3 Uncharacterized protein9.5e-1737.79Show/hide
Query:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q
        HF L S +LPTTH   VS++R+LL  ++L   SI+VG++I  EI  C  +K G LFFP+ IT LC+    P    +  L + G ID   +AR+      +
Subjt:  HFCLLSPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARL------Q

Query:  RTQEVRQGGLVCG--------VHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANFSKPYPAF
         TQ+                 V   L+ L    S+QE   +Q    W Y K RD AL+KALQ NF++P P F
Subjt:  RTQEVRQGGLVCG--------VHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANFSKPYPAF

A0A7J6FZ22 Uncharacterized protein1.6e-1133.33Show/hide
Query:  TYLMHYVSCHFCLL-SPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAID-TPN
        T L   + C +  + S +LPT+HDSTVSRER+ + + I++   I+VGKVIA EIF C  +  GKLFF   IT  C+   VP  +++  +  KG +   P+
Subjt:  TYLMHYVSCHFCLL-SPVLPTTHDSTVSRERVLLAFAILRSLSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAID-TPN

Query:  LARLQRTQEVRQGGLVCGVHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANF
         A  + T              + E+L+   + Q+    +  T WNY + RD  + + L+ N+
Subjt:  LARLQRTQEVRQGGLVCGVHHILEQLALSASRQEFAERQAHTLWNYVKRRDAALRKALQANF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTGCCAAAGAAGAAGACGTCGTGAGACCTACAAAATTGATGGCCAATTTTGGAAGGGTGTTCGACATAATTTGGCCGAGATACGTGAAGCCATGAATGATTATAT
TCAAATATGCAAAGAGATGGATTTACGAGACGAAGCCAAGAAGGCTCGAGCTGCACAATCCAATCAAATTAATGGAGATTGTTTAGCACCTCTGGATGATGACGACCAAC
ACATTCAAAATGGGGGTGATCATCAAAATCAAGAAGAAGAAGAGACAAACGGCGAGGTTAGTATAAAAGACAATGATGTGGTTGATATATGTGTTGAGAATGAGCTTGAG
GTAGATCGAGATGATGATTACAAAGTTGCCTTGCAAGGAGAGCATTTAGATTCGAGGACGAATCTTCTCGAAGAAGGGGAGAATGATAAGGAAATAAGTGATCAACTAGC
TCAATCCAATTATTATGGTGAAGAATTGCATCCTTTCAAGATTCACAAAGGCATCCTTTCATCCAAGAGGCACAATGAATCTAAAAAGCTAGATTCATTCACATATTTAA
TGCATTATGTATCTTGTCATTTCTGCCTGTTATCACCTGTACTTCCAACAACGCATGACTCCACGGTCTCTCGGGAAAGAGTTCTTCTAGCTTTTGCAATACTGCGGTCC
CTTAGCATCGATGTGGGTAAAGTTATCGCTGGTGAGATTTTTGGATGTTGGAGAAAGAAGGTGGGAAAACTATTCTTTCCAAACTCAATTACAATGCTTTGTAAGAGAGT
AGGGGTTCCAGAGAGTTCGGAGGATGTGATCCTACTAGACAAGGGAGCAATCGACACGCCTAACTTGGCACGACTTCAAAGAACGCAAGAGGTACGTCAAGGGGGGCTAG
TCTGTGGTGTTCATCATATCTTAGAACAACTCGCACTTTCAGCCAGCAGGCAAGAGTTCGCCGAAAGGCAGGCTCATACCTTATGGAATTATGTTAAAAGACGTGATGCT
GCATTGAGGAAGGCACTCCAAGCTAATTTTTCCAAGCCCTATCCAGCCTTCTCCTATTCCCTGATGATTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTGCCAAAGAAGAAGACGTCGTGAGACCTACAAAATTGATGGCCAATTTTGGAAGGGTGTTCGACATAATTTGGCCGAGATACGTGAAGCCATGAATGATTATAT
TCAAATATGCAAAGAGATGGATTTACGAGACGAAGCCAAGAAGGCTCGAGCTGCACAATCCAATCAAATTAATGGAGATTGTTTAGCACCTCTGGATGATGACGACCAAC
ACATTCAAAATGGGGGTGATCATCAAAATCAAGAAGAAGAAGAGACAAACGGCGAGGTTAGTATAAAAGACAATGATGTGGTTGATATATGTGTTGAGAATGAGCTTGAG
GTAGATCGAGATGATGATTACAAAGTTGCCTTGCAAGGAGAGCATTTAGATTCGAGGACGAATCTTCTCGAAGAAGGGGAGAATGATAAGGAAATAAGTGATCAACTAGC
TCAATCCAATTATTATGGTGAAGAATTGCATCCTTTCAAGATTCACAAAGGCATCCTTTCATCCAAGAGGCACAATGAATCTAAAAAGCTAGATTCATTCACATATTTAA
TGCATTATGTATCTTGTCATTTCTGCCTGTTATCACCTGTACTTCCAACAACGCATGACTCCACGGTCTCTCGGGAAAGAGTTCTTCTAGCTTTTGCAATACTGCGGTCC
CTTAGCATCGATGTGGGTAAAGTTATCGCTGGTGAGATTTTTGGATGTTGGAGAAAGAAGGTGGGAAAACTATTCTTTCCAAACTCAATTACAATGCTTTGTAAGAGAGT
AGGGGTTCCAGAGAGTTCGGAGGATGTGATCCTACTAGACAAGGGAGCAATCGACACGCCTAACTTGGCACGACTTCAAAGAACGCAAGAGGTACGTCAAGGGGGGCTAG
TCTGTGGTGTTCATCATATCTTAGAACAACTCGCACTTTCAGCCAGCAGGCAAGAGTTCGCCGAAAGGCAGGCTCATACCTTATGGAATTATGTTAAAAGACGTGATGCT
GCATTGAGGAAGGCACTCCAAGCTAATTTTTCCAAGCCCTATCCAGCCTTCTCCTATTCCCTGATGATTTGTTGA
Protein sequenceShow/hide protein sequence
MFCQRRRRRETYKIDGQFWKGVRHNLAEIREAMNDYIQICKEMDLRDEAKKARAAQSNQINGDCLAPLDDDDQHIQNGGDHQNQEEEETNGEVSIKDNDVVDICVENELE
VDRDDDYKVALQGEHLDSRTNLLEEGENDKEISDQLAQSNYYGEELHPFKIHKGILSSKRHNESKKLDSFTYLMHYVSCHFCLLSPVLPTTHDSTVSRERVLLAFAILRS
LSIDVGKVIAGEIFGCWRKKVGKLFFPNSITMLCKRVGVPESSEDVILLDKGAIDTPNLARLQRTQEVRQGGLVCGVHHILEQLALSASRQEFAERQAHTLWNYVKRRDA
ALRKALQANFSKPYPAFSYSLMIC