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Spg024142 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024142
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGypsy-like retrotransposase
Genome locationscaffold4:16607807..16612627
RNA-Seq ExpressionSpg024142
SyntenySpg024142
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]4.2e-1645.71Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE  + +        EA T+  KS    +E +SN PILRYVPLSRRKKGESPF E    LKVG++E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +LKE+F TPL  ITKQEI+    D T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

KAA0054591.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]1.7e-1746.43Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE  +          EA T   KS    +E +SN PILRYVPLSRRKKGESPF E S  LKVGD+E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +L+E+F TPL  ITK   QE+ TD+T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

KAA0062018.1 uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]2.5e-1646.43Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE  + +     +  EA T   KS    +E +SN PIL YVPLSRRKKGESPF E S  LKVGD+E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +LKE+F TPL  ITKQEI+    D T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.3e-1645.71Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE    +     +  EA T   KS    +E +SN  ILRYVPLSRRKKGESPF E    LKVGD+E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +LKE+F TPL  ITKQEI+    D T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

XP_008456446.1 PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo]1.5e-1834.82Show/hide
Query:  MLRRMKKSTQLEIANAENLMLGKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEHSHPIPYHYRLLQVVLSPENSREDTIGCPELIGEGKRYKEDHPF
        +L+++ +S +  I   +N +       S    + + PDVMSVMM D    E+           H R     L     +  T   PE+I   ++ +     
Subjt:  MLRRMKKSTQLEIANAENLMLGKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEHSHPIPYHYRLLQVVLSPENSREDTIGCPELIGEGKRYKEDHPF

Query:  ELQEPIIIWLQQESSSDIFQDQLESVENEDEGWTLHPKNAKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGI
          +E +  +     + +   +     E+  E    + KN   +S  EV + EV   EA T   KS    +E +SN PILRYVPLSRRKKGESPF E S  
Subjt:  ELQEPIIIWLQQESSSDIFQDQLESVENEDEGWTLHPKNAKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGI

Query:  LKVGDVEILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        LKVGD+E+L+E+F TPL  ITK   QE+ TD+T  +LP+ RTK  F+
Subjt:  LKVGDVEILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

TrEMBL top hitse value%identityAlignment
A0A1S3C4J2 uncharacterized protein LOC1034963897.4e-1934.82Show/hide
Query:  MLRRMKKSTQLEIANAENLMLGKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEHSHPIPYHYRLLQVVLSPENSREDTIGCPELIGEGKRYKEDHPF
        +L+++ +S +  I   +N +       S    + + PDVMSVMM D    E+           H R     L     +  T   PE+I   ++ +     
Subjt:  MLRRMKKSTQLEIANAENLMLGKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEHSHPIPYHYRLLQVVLSPENSREDTIGCPELIGEGKRYKEDHPF

Query:  ELQEPIIIWLQQESSSDIFQDQLESVENEDEGWTLHPKNAKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGI
          +E +  +     + +   +     E+  E    + KN   +S  EV + EV   EA T   KS    +E +SN PILRYVPLSRRKKGESPF E S  
Subjt:  ELQEPIIIWLQQESSSDIFQDQLESVENEDEGWTLHPKNAKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGI

Query:  LKVGDVEILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        LKVGD+E+L+E+F TPL  ITK   QE+ TD+T  +LP+ RTK  F+
Subjt:  LKVGDVEILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

A0A5A7UD46 Uncharacterized protein2.0e-1645.71Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE  + +        EA T+  KS    +E +SN PILRYVPLSRRKKGESPF E    LKVG++E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +LKE+F TPL  ITKQEI+    D T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

A0A5A7UM27 Gypsy-like retrotransposase8.2e-1846.43Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE  +          EA T   KS    +E +SN PILRYVPLSRRKKGESPF E S  LKVGD+E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +L+E+F TPL  ITK   QE+ TD+T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

A0A5A7V356 Uncharacterized protein1.2e-1646.43Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE  + +     +  EA T   KS    +E +SN PIL YVPLSRRKKGESPF E S  LKVGD+E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +LKE+F TPL  ITKQEI+    D T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

A0A5D3C0W6 Ty3-gypsy retrotransposon protein4.5e-1645.71Show/hide
Query:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE
        +L+ +SS ++   ++  V  ED    L  K+ A KE    +     +  EA T   KS    +E +SN  ILRYVPLSRRKKGESPF E    LKVGD+E
Subjt:  WLQQESSSDIFQDQLESVENEDEGWTLHPKN-AKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVE

Query:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE
        +LKE+F TPL  ITKQEI+    D T  +LP+ RTK  F+
Subjt:  ILKENFITPLITITKQEIQESNTDRTIVALPETRTKASFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGACGCATGAAAAAATCTACTCAACTTGAAATCGCCAATGCAGAAAATCTGATGCTTGGAAAATTCATCTCTCCTTCTCAGCAACCAAACGAAACATCCAGTCC
TGATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAACGAATGGCTGAACATTCCCATCCCATTCCCTATCACTATAGACTCCTACAAGTCGTTCTTAGCC
CGGAGAATAGTAGGGAAGACACTATCGGTTGTCCAGAGTTGATTGGAGAAGGAAAACGTTACAAGGAGGATCATCCATTTGAGCTACAAGAGCCGATTATTATTTGGCTT
CAGCAAGAATCTTCGAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGATGAAGGATGGACTTTGCATCCAAAGAATGCGAAGAAGGAGTCAATGGAAGA
GGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGTGAAATCAAAGGCTCCAAAGGAAGAGACGTCATCAAACATCCCTATATTGCGCTACGTTCCTT
TATCTCGGCGCAAGAAGGGGGAATCACCATTCACAGAATGTTCGGGAATTTTGAAAGTTGGTGATGTGGAGATTCTAAAAGAAAATTTCATCACACCTCTTATAACAATT
ACCAAGCAAGAGATTCAAGAATCAAATACTGATCGTACCATAGTGGCTTTGCCGGAAACACGAACGAAGGCTAGCTTTGAAAGTTGTAGATGCACATCACACAACAACAG
AATAGGTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGACGCATGAAAAAATCTACTCAACTTGAAATCGCCAATGCAGAAAATCTGATGCTTGGAAAATTCATCTCTCCTTCTCAGCAACCAAACGAAACATCCAGTCC
TGATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAACGAATGGCTGAACATTCCCATCCCATTCCCTATCACTATAGACTCCTACAAGTCGTTCTTAGCC
CGGAGAATAGTAGGGAAGACACTATCGGTTGTCCAGAGTTGATTGGAGAAGGAAAACGTTACAAGGAGGATCATCCATTTGAGCTACAAGAGCCGATTATTATTTGGCTT
CAGCAAGAATCTTCGAGTGACATCTTCCAAGACCAACTTGAGTCTGTTGAAAATGAAGATGAAGGATGGACTTTGCATCCAAAGAATGCGAAGAAGGAGTCAATGGAAGA
GGTAGATGCTTGTGAAGTTCAGACAAAGGAAGCACCTACCCATCCTGTGAAATCAAAGGCTCCAAAGGAAGAGACGTCATCAAACATCCCTATATTGCGCTACGTTCCTT
TATCTCGGCGCAAGAAGGGGGAATCACCATTCACAGAATGTTCGGGAATTTTGAAAGTTGGTGATGTGGAGATTCTAAAAGAAAATTTCATCACACCTCTTATAACAATT
ACCAAGCAAGAGATTCAAGAATCAAATACTGATCGTACCATAGTGGCTTTGCCGGAAACACGAACGAAGGCTAGCTTTGAAAGTTGTAGATGCACATCACACAACAACAG
AATAGGTGAGTGA
Protein sequenceShow/hide protein sequence
MLRRMKKSTQLEIANAENLMLGKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEHSHPIPYHYRLLQVVLSPENSREDTIGCPELIGEGKRYKEDHPFELQEPIIIWL
QQESSSDIFQDQLESVENEDEGWTLHPKNAKKESMEEVDACEVQTKEAPTHPVKSKAPKEETSSNIPILRYVPLSRRKKGESPFTECSGILKVGDVEILKENFITPLITI
TKQEIQESNTDRTIVALPETRTKASFESCRCTSHNNRIGE