; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024158 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024158
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold4:18319047..18328641
RNA-Seq ExpressionSpg024158
SyntenySpg024158
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034955.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-0559.18Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEV
        IRD PLI   ESG  ADSI L  W +   GAG++ TQDGIHSFP LG +
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEV
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0670.21Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
        IRD PLI  GESG  ADSI L  WGQDRVG     TQDGIHSFP LG
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
KAA0062047.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.1e-0456.25Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGE
        +RD PLI MGESG   DS  L  W +   GAG++ TQD IHSFP +GE
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGE
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0670.21Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
        IRD PLI  GESG  ADSI L  WGQDRVG     TQDGIHSFP LG
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
TYK30754.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-0553.06Show/hide
Query:  YPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEVDEC
        Y + ++G+SG  ADSI L  W + + G G++ TQDGIHSFP LG+VD+C
Subjt:  YPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEVDEC
TrEMBL top hitse value%identityAlignment
A0A5A7T0G5 Gag/pol protein3.8e-0559.18Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEV
        IRD PLI   ESG  ADSI L  W +   GAG++ TQDGIHSFP LG +
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEV
A0A5A7U202 Reverse transcriptase1.2e-0670.21Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
        IRD PLI  GESG  ADSI L  WGQDRVG     TQDGIHSFP LG
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
A0A5A7V524 Retrotransposable element Tf22.5e-0456.25Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGE
        +RD PLI MGESG   DS  L  W +   GAG++ TQD IHSFP +GE
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGE
A0A5D3CBX3 Reverse transcriptase1.2e-0670.21Show/hide
Query:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
        IRD PLI  GESG  ADSI L  WGQDRVG     TQDGIHSFP LG
Subjt:  IRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLG
A0A5D3E4C4 Gag/pol protein1.7e-0553.06Show/hide
Query:  YPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEVDEC
        Y + ++G+SG  ADSI L  W + + G G++ TQDGIHSFP LG+VD+C
Subjt:  YPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEVDEC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAAAGCCCAGTTGCGGCCGCAAATCGGGCGCAAATTTTCTTGAGCACTGCCTTGACACTTCTATCTTCAGCTGGGGCTACATTCCTTATTGGTTTGCGGGCGCA
TTTCCAATGCATCTTCCACATCTTCAAGACCAGATGCAGGCGCAAAATCTTCAACTTCTACTCTTTTGCTCTACTATCCTTTAATATCCACTTGCGGGCACATTTCCCTT
GCAAAGTCCTCTGCACAAAAACATTAACCTTGGATAAATTCTTGCAAAAGACTCATTACGAGCTAGCAAGTGGACCTAATGGACCTACAGATCAGAAGAGTCTCGACTCT
GATGATGGGCGTCTCGACGCTGATGAGGCTCCAGGGGCAAAATGGTCATTTTACGCTCCGATTTCGCTCGTTTTAGCCCCGAATTGCTTCCAAAGCTCCGAAGTTCCTCT
CAGGCCAGGAGAGGACGGCGCACCTTTGTTCAAGACCCGGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAAGAGTGAATTCCATCTTGTAATGT
TATGTTCCCAGCCCACACTCGGTCTTACCCCTGAAATGGATACCCCCACTCGCATGTCTCTTACATGGATGCTTTGGATCATTGCATCTGTATCGAAGACAAAACGGGTC
ATATCACATAGTGTCACCAGGATAAGGGATTATCCTTTGATTAGTATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGACAAGACCGAGTGGG
GGCTGGGGACATGACAACACAAGATGGAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGCCAGAGGTCGT
TCCCTTCGATTTCAGCGGCGCGTGCGAGGATAAAAGCTTCTTACGGTGGGTCTGGGTTACAAACGAGCAGCGGCGGATTGGGTTACGTACAAGCAGCGGCGGCTCTGGGT
TACGTACAAGCAGCGACGCCGGCGAATCTGAAGCTTCTTACGGCGGGTCTGGGTTACAAACGAACAGCGGTGGCTCTGGGTTACGTACAAGCAGCGGCGCTGGCGAATCT
GAAGCTTCTTACGGCGGGTCTGGGTTATAAACGAGGAGAGAAGAGTGGCAGTGGGGGAGAGAGAGGAAGGGAGAGAAAGAGTCTCACCACTCCGCTCTCAATCTCAGAGA
ATAGCAGGGTAGCCTCGTGGTGGTGTTTGCCGTTCAAAAATAATCAAGAAGGCGTTCTTGAATTCAGAGTCATCAACGAAGATCTGTCTTCATGGGCAGCAGTTCGAGCA
GTTGCTGAAGCGGTTTCGGGCGTGCGGTTTTCAGACAGTTGCTGTCCGGTTCGTGGGTTGAGGCGCAGTTCAGACCAGTTTGAGGACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGAAAGCCCAGTTGCGGCCGCAAATCGGGCGCAAATTTTCTTGAGCACTGCCTTGACACTTCTATCTTCAGCTGGGGCTACATTCCTTATTGGTTTGCGGGCGCA
TTTCCAATGCATCTTCCACATCTTCAAGACCAGATGCAGGCGCAAAATCTTCAACTTCTACTCTTTTGCTCTACTATCCTTTAATATCCACTTGCGGGCACATTTCCCTT
GCAAAGTCCTCTGCACAAAAACATTAACCTTGGATAAATTCTTGCAAAAGACTCATTACGAGCTAGCAAGTGGACCTAATGGACCTACAGATCAGAAGAGTCTCGACTCT
GATGATGGGCGTCTCGACGCTGATGAGGCTCCAGGGGCAAAATGGTCATTTTACGCTCCGATTTCGCTCGTTTTAGCCCCGAATTGCTTCCAAAGCTCCGAAGTTCCTCT
CAGGCCAGGAGAGGACGGCGCACCTTTGTTCAAGACCCGGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAAGAGTGAATTCCATCTTGTAATGT
TATGTTCCCAGCCCACACTCGGTCTTACCCCTGAAATGGATACCCCCACTCGCATGTCTCTTACATGGATGCTTTGGATCATTGCATCTGTATCGAAGACAAAACGGGTC
ATATCACATAGTGTCACCAGGATAAGGGATTATCCTTTGATTAGTATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGACAAGACCGAGTGGG
GGCTGGGGACATGACAACACAAGATGGAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAGCCAGAGGTCGT
TCCCTTCGATTTCAGCGGCGCGTGCGAGGATAAAAGCTTCTTACGGTGGGTCTGGGTTACAAACGAGCAGCGGCGGATTGGGTTACGTACAAGCAGCGGCGGCTCTGGGT
TACGTACAAGCAGCGACGCCGGCGAATCTGAAGCTTCTTACGGCGGGTCTGGGTTACAAACGAACAGCGGTGGCTCTGGGTTACGTACAAGCAGCGGCGCTGGCGAATCT
GAAGCTTCTTACGGCGGGTCTGGGTTATAAACGAGGAGAGAAGAGTGGCAGTGGGGGAGAGAGAGGAAGGGAGAGAAAGAGTCTCACCACTCCGCTCTCAATCTCAGAGA
ATAGCAGGGTAGCCTCGTGGTGGTGTTTGCCGTTCAAAAATAATCAAGAAGGCGTTCTTGAATTCAGAGTCATCAACGAAGATCTGTCTTCATGGGCAGCAGTTCGAGCA
GTTGCTGAAGCGGTTTCGGGCGTGCGGTTTTCAGACAGTTGCTGTCCGGTTCGTGGGTTGAGGCGCAGTTCAGACCAGTTTGAGGACTTTTGA
Protein sequenceShow/hide protein sequence
MSESPVAAANRAQIFLSTALTLLSSAGATFLIGLRAHFQCIFHIFKTRCRRKIFNFYSFALLSFNIHLRAHFPCKVLCTKTLTLDKFLQKTHYELASGPNGPTDQKSLDS
DDGRLDADEAPGAKWSFYAPISLVLAPNCFQSSEVPLRPGEDGAPLFKTRNQPLREHTSTYPNRGKSEFHLVMLCSQPTLGLTPEMDTPTRMSLTWMLWIIASVSKTKRV
ISHSVTRIRDYPLISMGESGLHADSISLPSWGQDRVGAGDMTTQDGIHSFPLLGEVDECCSLEEHWYLRSQRSFPSISAARARIKASYGGSGLQTSSGGLGYVQAAAALG
YVQAATPANLKLLTAGLGYKRTAVALGYVQAAALANLKLLTAGLGYKRGEKSGSGGERGRERKSLTTPLSISENSRVASWWCLPFKNNQEGVLEFRVINEDLSSWAAVRA
VAEAVSGVRFSDSCCPVRGLRRSSDQFEDF