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Spg024163 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024163
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:19940489..19942864
RNA-Seq ExpressionSpg024163
SyntenySpg024163
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]2.7e-1036.55Show/hide
Query:  PLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE-E
        P W  P  G  KLN D AW     RGGVGWVLR+  G  + AG     R       E EA+R  L+  L    D      + VESD+L ++K+L  E+  
Subjt:  PLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE-E

Query:  DLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWG
        DL   G++F V     R   V+F    R  N  AH +A  A   G
Subjt:  DLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWG

CAB4273082.1 unnamed protein product [Prunus armeniaca]9.2e-1135.29Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGE-EEDL
        WR P  G  K+N DAAW +  + GGVGWV+R+S G +V AG     R     A+E EAIR  L A ++          L+VESD+L V++++ GE   D+
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGE-EEDL

Query:  SESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLA
        +   ++F +   + + +   F    R+ N  AH++A
Subjt:  SESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-1034.75Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS
        W+PP    WKLN++AAW      GG+GW+LR+  G ++ A C  I     I  LE  AI  GL A  +         P+ +ESD+L  + +L  + +D +
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS

Query:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAATE
        E   +   I +M +  E V     SR  N +AH LA  A E
Subjt:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAATE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.5e-1338.57Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS
        W PP    W LN+DA+WS+S  RGG+GW++R   G +V AG   +     +K LE  AI  GL      T+ G LR PL +E+D+  V  +L  + EDL+
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS

Query:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAAT
        ++G +   IL +    E + F    R TN  AH LA  A+
Subjt:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAAT

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.1e-1135.17Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAF----LRGTSDGRLRPPLKVESDALGVVKVLAGEE
        W+PP    WKLN+DAAW      GG+GW+LR+  G ++ A C  I     I  LE  AI  GL A      R       R P+ +ESD+L  + +L  + 
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAF----LRGTSDGRLRPPLKVESDALGVVKVLAGEE

Query:  EDLSESGLIFAVILEMSRGER-VDFELCSRSTNVLAHQLAHAATE
        +D +E   +   I +M    + V     SR  N +AH LA  A E
Subjt:  EDLSESGLIFAVILEMSRGER-VDFELCSRSTNVLAHQLAHAATE

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein1.3e-1036.55Show/hide
Query:  PLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE-E
        P W  P  G  KLN D AW     RGGVGWVLR+  G  + AG     R       E EA+R  L+  L    D      + VESD+L ++K+L  E+  
Subjt:  PLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE-E

Query:  DLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWG
        DL   G++F V     R   V+F    R  N  AH +A  A   G
Subjt:  DLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWG

A0A6J1CP26 uncharacterized protein LOC1110134125.8e-1134.75Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS
        W+PP    WKLN++AAW      GG+GW+LR+  G ++ A C  I     I  LE  AI  GL A  +         P+ +ESD+L  + +L  + +D +
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS

Query:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAATE
        E   +   I +M +  E V     SR  N +AH LA  A E
Subjt:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAATE

A0A6J1DNV9 uncharacterized protein LOC1110224037.3e-1438.57Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS
        W PP    W LN+DA+WS+S  RGG+GW++R   G +V AG   +     +K LE  AI  GL      T+ G LR PL +E+D+  V  +L  + EDL+
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS

Query:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAAT
        ++G +   IL +    E + F    R TN  AH LA  A+
Subjt:  ESGLIFAVILEMSRG-ERVDFELCSRSTNVLAHQLAHAAT

A0A6J1DSV1 uncharacterized protein LOC1110236083.4e-1135.17Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAF----LRGTSDGRLRPPLKVESDALGVVKVLAGEE
        W+PP    WKLN+DAAW      GG+GW+LR+  G ++ A C  I     I  LE  AI  GL A      R       R P+ +ESD+L  + +L  + 
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAF----LRGTSDGRLRPPLKVESDALGVVKVLAGEE

Query:  EDLSESGLIFAVILEMSRGER-VDFELCSRSTNVLAHQLAHAATE
        +D +E   +   I +M    + V     SR  N +AH LA  A E
Subjt:  EDLSESGLIFAVILEMSRGER-VDFELCSRSTNVLAHQLAHAATE

A0A6J5UAY2 Reverse transcriptase domain-containing protein4.5e-1135.29Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGE-EEDL
        WR P  G  K+N DAAW +  + GGVGWV+R+S G +V AG     R     A+E EAIR  L A ++          L+VESD+L V++++ GE   D+
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGE-EEDL

Query:  SESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLA
        +   ++F +   + + +   F    R+ N  AH++A
Subjt:  SESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0540Show/hide
Query:  LKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAG
        ++ + +H  WR P+RGW K N D ++ N   +   GWV+R+S GS + AG
Subjt:  LKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAG

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.8e-0825Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS
        W+ P   W K N+DA W     R G+GW+LR  +G ++  G   + R+  +   E EA+R  +    R          +  ESDA  +V +L  ++   +
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLS

Query:  ESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWGDF
            +  +   +   E V FE   R  N +A ++A  +  + ++
Subjt:  ESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWGDF

AT4G29090.1 Ribonuclease H-like superfamily protein7.0e-0928.87Show/hide
Query:  SQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLA
        ++SS   WRPP   W K N+DA W+    R G+GWVLR   G +   G   + +   +   E EA+R  + +  R   +  +      ESD+  ++++L 
Subjt:  SQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLA

Query:  GEEEDLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLA
         +E   S    I  +   +S+   V F    R  N LA ++A
Subjt:  GEEEDLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLA

AT5G19270.1 unknown protein9.5e-0624.84Show/hide
Query:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFL---RGTSDGRLRPPLKVESDALGVVKVLAGEEE
        W PPD G  K N +A W N+    GV W+ R+  G  +       TRS          I   L   L   +   D RL+  + + SD    +  L    +
Subjt:  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFL---RGTSDGRLRPPLKVESDALGVVKVLAGEEE

Query:  DLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWGDFSMFFGSSSPV
            +  +  + +       + FEL S   N +A  +A + T  G F+ +     PV
Subjt:  DLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWGDFSMFFGSSSPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCAGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAG
AGGAGGCGTTGGATGGGTGCTTCGTGAGTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGTCAAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTC
GCGTTGGCTTGAGCGCGTTTCTTCGTGGGACGAGTGACGGCCGCCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCGGTGTCGTGAAAGTGTTAGCGGGAGAGGAA
GAAGATCTTTCGGAATCAGGCCTGATCTTCGCTGTGATTTTAGAGATGTCTAGGGGAGAAAGAGTCGATTTTGAGTTGTGTAGTAGAAGTACCAATGTTTTGGCCCATCA
GCTTGCGCATGCAGCAACTGAATGGGGGGATTTTTCTATGTTTTTTGGCTCTTCTTCCCCTGTTCTAGAAGATAGAGAGGATGTTGAAACCGAGAAAACAGATCAAGAAC
AACTAACCTCTTGGAGCTCCGAAATCGTTGATTCTCTTGGAAGTTTCTCCACACGAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCAGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAG
AGGAGGCGTTGGATGGGTGCTTCGTGAGTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGTCAAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTC
GCGTTGGCTTGAGCGCGTTTCTTCGTGGGACGAGTGACGGCCGCCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCGGTGTCGTGAAAGTGTTAGCGGGAGAGGAA
GAAGATCTTTCGGAATCAGGCCTGATCTTCGCTGTGATTTTAGAGATGTCTAGGGGAGAAAGAGTCGATTTTGAGTTGTGTAGTAGAAGTACCAATGTTTTGGCCCATCA
GCTTGCGCATGCAGCAACTGAATGGGGGGATTTTTCTATGTTTTTTGGCTCTTCTTCCCCTGTTCTAGAAGATAGAGAGGATGTTGAAACCGAGAAAACAGATCAAGAAC
AACTAACCTCTTGGAGCTCCGAAATCGTTGATTCTCTTGGAAGTTTCTCCACACGAACTTGA
Protein sequenceShow/hide protein sequence
MEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE
EDLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWGDFSMFFGSSSPVLEDREDVETEKTDQEQLTSWSSEIVDSLGSFSTRT