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Spg024167 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024167
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:21069080..21070469
RNA-Seq ExpressionSpg024167
SyntenySpg024167
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.8e-2059.62Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVSV  TGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GGVT
          VT
Subjt:  GGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2366.34Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + VE        L GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  V
        V
Subjt:  V

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]5.9e-2159.13Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+SVE TGIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGGV--TATNRPVKQ
         GGV    T+R  KQ
Subjt:  GGGV--TATNRPVKQ

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.9e-1853.33Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWF-----NVSVEL-------------------TGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW      +V VE+                    GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWF-----NVSVEL-------------------TGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGVTAT
        LHAVFRAK AGGP GGVT +
Subjt:  LHAVFRAKLAGGPGGGVTAT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2366.34Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + VE        L GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.8e-2059.62Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVSV  TGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GGVT
          VT
Subjt:  GGVT

A0A5A7VMG9 Reverse transcriptase8.0e-2466.34Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + VE        L GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  V
        V
Subjt:  V

A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.8e-2159.13Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+SVE TGIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGGV--TATNRPVKQ
         GGV    T+R  KQ
Subjt:  GGGV--TATNRPVKQ

A0A5D3CCC7 DNA/RNA polymerases superfamily protein3.8e-1853.33Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWF-----NVSVEL-------------------TGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW      +V VE+                    GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWF-----NVSVEL-------------------TGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGVTAT
        LHAVFRAK AGGP GGVT +
Subjt:  LHAVFRAKLAGGPGGGVTAT

A0A5D3DX39 Reverse transcriptase8.0e-2466.34Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + VE        L GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAGTAGAGCTAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTGTGACAGCGACGAACAGGCCTGTTAAGCAGCCAGAGGTCGATGGCACAGCAGTTTGCCCAGAAGACAGGATCCCAAGAAAAGACCAGTCTGATCCACTGCTTCTC
GATCCGCAACCACAGAGATCTCTTCCTCATCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAGTAGAGCTAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGTGTGACAGCGACGAACAGGCCTGTTAAGCAGCCAGAGGTCGATGGCACAGCAGTTTGCCCAGAAGACAGGATCCCAAGAAAAGACCAGTCTGATCCACTGCTTCTC
GATCCGCAACCACAGAGATCTCTTCCTCATCCGTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSVELTGIVRGDDVCWLHAVFRAKLAGGPGGGVTATNRPVKQPEVDGTAVCPEDRIPRKDQSDPLLL
DPQPQRSLPHP