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Spg024179 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024179
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:22198520..22202038
RNA-Seq ExpressionSpg024179
SyntenySpg024179
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]3.7e-0757.14Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY
        +VE+ELPV DTLP SAESS S+S S         + EDDV WLH +F  + AGG GGGVT WY
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0645.45Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL----------------------EEDDVRWLHAIFGTELAGGQGGGVTIWY
        +VE+ELPVPD LPTSAESS S+SS+ L+   E   + +                        DDV WLHAIF  + AGG GGGVT WY
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL----------------------EEDDVRWLHAIFGTELAGGQGGGVTIWY

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-0755.07Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV
        +VE+ELPVPDTLPTSAESS S+SS+ L+   E   + +        EDDV WLHA+F  + AGG GGGV
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.1e-0655.56Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY
        +VE+ELPV DTLPTSAESS S+S S         +  DDV WLH++F  + A G GGGVT WY
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-0755.07Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV
        +VE+ELPVPDTLPTSAESS S+SS+ L+   E   + +        EDDV WLHA+F  + AGG GGGV
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase4.0e-0755.07Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV
        +VE+ELPVPDTLPTSAESS S+SS+ L+   E   + +        EDDV WLHA+F  + AGG GGGV
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.8e-0757.14Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY
        +VE+ELPV DTLP SAESS S+S S         + EDDV WLH +F  + AGG GGGVT WY
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY

A0A5D3BTP3 Reverse transcriptase6.8e-0745.45Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL----------------------EEDDVRWLHAIFGTELAGGQGGGVTIWY
        +VE+ELPVPD LPTSAESS S+SS+ L+   E   + +                        DDV WLHAIF  + AGG GGGVT WY
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL----------------------EEDDVRWLHAIFGTELAGGQGGGVTIWY

A0A5D3CU23 Retrotrans_gag domain-containing protein5.2e-0755.56Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY
        +VE+ELPV DTLPTSAESS S+S S         +  DDV WLH++F  + A G GGGVT WY
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDVRWLHAIFGTELAGGQGGGVTIWY

A0A5D3DX39 Reverse transcriptase4.0e-0755.07Show/hide
Query:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV
        +VE+ELPVPDTLPTSAESS S+SS+ L+   E   + +        EDDV WLHA+F  + AGG GGGV
Subjt:  MVEVELPVPDTLPTSAESSSSSSSSTLQ---EGQRISL-------EEDDVRWLHAIFGTELAGGQGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTATATGAACACCTTCAAGGATTCAGTCCATCGCATCAAGAAAAGGAGTAAGGCATTTACGCGCTGTGATAATTCTTCTTGTTGTTTGCGCAGCAACTCTTGTGG
CTGGCACATCCGCACTTCCGCAGCATGGCTTGTGCTCGCAGAAGCATTGGCTTGGGGTGTAGAGCTCGGCACAGGAACTTCTTCATTGCGAGTGGGGCTAGGCAATGAGA
CTTCAAAAATCTCCTCTTGGCGCAAGGTCTCGTTGTGTTGCGGAGGAGGCGCAGATGCAGGGACTGTTGGATGGGATGCGGGGGCTGGCTGCTGGGTGCTTTCTTGCAGA
CGCATTTCGCGGGTGCGCGTTACGCGCGTCCACCATTGGTCGTCAAAATCCTTCTGCATGGGTCGGATTTCTTCGTCTGCTGCGGGCAAGAGGCCTGATGCGCGACATAG
ACGGGTGACGAGGCAGGACAAAACATTGCGCCCTTTCGTTTTGCGGCAGTCTGACGCAATGTTTCGACAATGCATCCAGAATGTGGCCTCAAACTCCAACAACTGCGCCT
TTAGGGTTCTCGCAGCTCCATGGCAGTCCCACTTGGCCCCAGGTCTAGCCACTGCAAGAAGGACTACGCTCAAGAAATCATCGTCGAGGCAGTCGAGTAACGCAATCCCC
TCTGCGTCTGGGATGTCTCGCAGCTCGAATATGCTGTTGATGCATGCAGAGGAGAAGGTGACTGCGTGGCCTCGCACCAAAACTTCGTCTACTTCTTCTTGCCACTGCGC
GCGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTTTGGTTTTCTCTGGTTTTCCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTAGAGG
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGAATATCGTTAGAGGAGGACGATGTT
CGTTGGCTTCACGCTATCTTCGGGACTGAGCTAGCAGGTGGTCAGGGAGGGGGTGTGACAATTTGGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTATATGAACACCTTCAAGGATTCAGTCCATCGCATCAAGAAAAGGAGTAAGGCATTTACGCGCTGTGATAATTCTTCTTGTTGTTTGCGCAGCAACTCTTGTGG
CTGGCACATCCGCACTTCCGCAGCATGGCTTGTGCTCGCAGAAGCATTGGCTTGGGGTGTAGAGCTCGGCACAGGAACTTCTTCATTGCGAGTGGGGCTAGGCAATGAGA
CTTCAAAAATCTCCTCTTGGCGCAAGGTCTCGTTGTGTTGCGGAGGAGGCGCAGATGCAGGGACTGTTGGATGGGATGCGGGGGCTGGCTGCTGGGTGCTTTCTTGCAGA
CGCATTTCGCGGGTGCGCGTTACGCGCGTCCACCATTGGTCGTCAAAATCCTTCTGCATGGGTCGGATTTCTTCGTCTGCTGCGGGCAAGAGGCCTGATGCGCGACATAG
ACGGGTGACGAGGCAGGACAAAACATTGCGCCCTTTCGTTTTGCGGCAGTCTGACGCAATGTTTCGACAATGCATCCAGAATGTGGCCTCAAACTCCAACAACTGCGCCT
TTAGGGTTCTCGCAGCTCCATGGCAGTCCCACTTGGCCCCAGGTCTAGCCACTGCAAGAAGGACTACGCTCAAGAAATCATCGTCGAGGCAGTCGAGTAACGCAATCCCC
TCTGCGTCTGGGATGTCTCGCAGCTCGAATATGCTGTTGATGCATGCAGAGGAGAAGGTGACTGCGTGGCCTCGCACCAAAACTTCGTCTACTTCTTCTTGCCACTGCGC
GCGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTTTGGTTTTCTCTGGTTTTCCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTAGAGG
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGAATATCGTTAGAGGAGGACGATGTT
CGTTGGCTTCACGCTATCTTCGGGACTGAGCTAGCAGGTGGTCAGGGAGGGGGTGTGACAATTTGGTATTAG
Protein sequenceShow/hide protein sequence
MCYMNTFKDSVHRIKKRSKAFTRCDNSSCCLRSNSCGWHIRTSAAWLVLAEALAWGVELGTGTSSLRVGLGNETSKISSWRKVSLCCGGGADAGTVGWDAGAGCWVLSCR
RISRVRVTRVHHWSSKSFCMGRISSSAAGKRPDARHRRVTRQDKTLRPFVLRQSDAMFRQCIQNVASNSNNCAFRVLAAPWQSHLAPGLATARRTTLKKSSSRQSSNAIP
SASGMSRSSNMLLMHAEEKVTAWPRTKTSSTSSCHCARAQDFRANQEDLWFSLVFRAFWGVQVESEALFGMVEVELPVPDTLPTSAESSSSSSSSTLQEGQRISLEEDDV
RWLHAIFGTELAGGQGGGVTIWY