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Spg024182 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024182
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold4:19018103..19022786
RNA-Seq ExpressionSpg024182
SyntenySpg024182
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]4.7e-0635.77Show/hide
Query:  NMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA
        +MS DE  G    Q+      S GSKRKR +                           K+K ATE + R  +V  L ++P+L +Q R KLM ILF +++A
Subjt:  NMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA

Query:  TESFFSIPAALKLEYWELLLHKH
         E F SIP  LKLEY  +LL  +
Subjt:  TESFFSIPAALKLEYWELLLHKH

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.1e-0630.54Show/hide
Query:  FVKSSKTHLDKERGREAG-GVPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA----------------------
        F K   T    E   + G  VP + N  +     +D  IP       +MS DE  G    Q+      S GSKRK+ +                      
Subjt:  FVKSSKTHLDKERGREAG-GVPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA----------------------

Query:  -----KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL
             K+K ATE + R  ++  L ++PEL ++ R KL+ ILF +++A E F SIP   KLEY  +LL
Subjt:  -----KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL

KAA0061662.1 protein sym-1 [Cucumis melo var. makuwa]4.7e-0637.4Show/hide
Query:  VPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA
        VP V N  +S    +D  IP       +MS DE  G    Q+      S GS   R+AK+K A E +    +   + ++PEL +Q R KLM IL  +++A
Subjt:  VPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA

Query:  TESFFSIPAALKLEYWELLLHKH
         E F SIP  LKLEY  +LL  +
Subjt:  TESFFSIPAALKLEYWELLLHKH

XP_038880512.1 ER membrane protein complex subunit 6 [Benincasa hispida]3.6e-0647.69Show/hide
Query:  KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKH
        K+K ATE +    +V+ L ++PEL N+KRV+L+ I+F +++ T+SF SIP ALKL+Y  LLL ++
Subjt:  KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKH

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]2.6e-0934.42Show/hide
Query:  GREAGGVPRVLNLSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRK---------------------------RVAKKKHATEADFR
        G  A  VP  ++  AS ++            ++S+DE  GTP         S RGSKRK                             +KK+HATE + R
Subjt:  GREAGGVPRVLNLSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRK---------------------------RVAKKKHATEADFR

Query:  DTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKH
          +V  L ++P+L  Q+++K M+I+F N+  TESF SIPA +KLEY ELLL  H
Subjt:  DTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKH

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI12.9e-0630.54Show/hide
Query:  FVKSSKTHLDKERGREAG-GVPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA----------------------
        F K   T    E   + G  VP + N  +     +D  IP       +MS DE  G    Q+      S GSKRK+ +                      
Subjt:  FVKSSKTHLDKERGREAG-GVPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA----------------------

Query:  -----KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL
             K+K ATE + R  ++  L ++PEL ++ R KL+ ILF +++A E F SIP   KLEY  +LL
Subjt:  -----KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLL

A0A5A7U0H7 Retrotransposon protein1.9e-0533.83Show/hide
Query:  NDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIVTHLMEVPELDNQKR
        +D  IP       +MS DE  G    Q+      S  SKRKR +                           K+K A E + R  +V  L ++P+L +Q R
Subjt:  NDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIVTHLMEVPELDNQKR

Query:  VKLMDILFNNMKATESFFSIPAALKLEYWELLL
         KLM ILF +++A E F SIP  LKLEY  +LL
Subjt:  VKLMDILFNNMKATESFFSIPAALKLEYWELLL

A0A5A7V8C5 Putative nuclease HARBI18.6e-0646.15Show/hide
Query:  KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKH
        K+K ATE +    +V  L ++PEL +Q R KLM ILF +++  E F SIP  LKLEY  +LL  +
Subjt:  KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKH

A0A5D3BZU3 Retrotransposon protein2.3e-0635.77Show/hide
Query:  NMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA
        +MS DE  G    Q+      S GSKRKR +                           K+K ATE + R  +V  L ++P+L +Q R KLM ILF +++A
Subjt:  NMSEDEPRGTPGSQSCPTGRSSRGSKRKRVA---------------------------KKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA

Query:  TESFFSIPAALKLEYWELLLHKH
         E F SIP  LKLEY  +LL  +
Subjt:  TESFFSIPAALKLEYWELLLHKH

A0A5D3DBV3 Protein sym-12.3e-0637.4Show/hide
Query:  VPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA
        VP V N  +S    +D  IP       +MS DE  G    Q+      S GS   R+AK+K A E +    +   + ++PEL +Q R KLM IL  +++A
Subjt:  VPRVLN--LSASPENDTHIPPFTIPTANMSEDEPRGTPGSQSCPTGRSSRGSKRKRVAKKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKA

Query:  TESFFSIPAALKLEYWELLLHKH
         E F SIP  LKLEY  +LL  +
Subjt:  TESFFSIPAALKLEYWELLLHKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGATCTTGCGCGGACAGCAGCTTGAAGTGTCGTTCCTTGCGTTTTTGCCTCTGTCCAGCAGCTATTTCGGGCGTTTTCGAGGTCGTTTGGCATTTTTGTGCCGT
CTTTGCTCAGTTCGTGAGTGGTTCGGCGTCAATTAGCGTTTTCGCGCCATCTAGGTGTTCGTTTAAGTTCGAAACACTTCTGCTTGATCACCCACTGCCCAAGGACTATT
CTAGCGCATCGTTAGAGGTTAGAATAACCCGTCTAACGCGGAAGCGAGTCCGTTTGTGTGCTTTAGGTGGGTCGTTTACTTGCTGTCCAGCAGCTGAAAAGCCTTATCTG
GAGCCGTTTGGAGAACACCCATTGCCCGTTTTCGAGGTGCTTATGGAGCTTGGTGCAAGTGTGCCTCGTTGGTATTTGGAAGCGTGTTTTGATTTGCGTAGCGTGGCGCG
TAACGCACGTGTTGGTTGGCGTAGCATGGCGCTTATTTTATGTGTTGATATGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAG
CTGGTGGAGTCCCTCGTGTCCTTAACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCGCCGTTCACCATACCTACTGCGAACATGTCAGAGGATGAACCTCGGGGT
ACGCCAGGCAGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGAGTGGCCAAAAAAAAACATGCCACAGAGGCTGACTTTCGAGATACAATTGT
CACCCACTTGATGGAGGTACCAGAATTGGATAACCAAAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTG
CTCTGAAGTTGGAGTACTGGGAACTCCTCCTGCACAAACATGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGATCTTGCGCGGACAGCAGCTTGAAGTGTCGTTCCTTGCGTTTTTGCCTCTGTCCAGCAGCTATTTCGGGCGTTTTCGAGGTCGTTTGGCATTTTTGTGCCGT
CTTTGCTCAGTTCGTGAGTGGTTCGGCGTCAATTAGCGTTTTCGCGCCATCTAGGTGTTCGTTTAAGTTCGAAACACTTCTGCTTGATCACCCACTGCCCAAGGACTATT
CTAGCGCATCGTTAGAGGTTAGAATAACCCGTCTAACGCGGAAGCGAGTCCGTTTGTGTGCTTTAGGTGGGTCGTTTACTTGCTGTCCAGCAGCTGAAAAGCCTTATCTG
GAGCCGTTTGGAGAACACCCATTGCCCGTTTTCGAGGTGCTTATGGAGCTTGGTGCAAGTGTGCCTCGTTGGTATTTGGAAGCGTGTTTTGATTTGCGTAGCGTGGCGCG
TAACGCACGTGTTGGTTGGCGTAGCATGGCGCTTATTTTATGTGTTGATATGAATGGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAG
CTGGTGGAGTCCCTCGTGTCCTTAACCTCAGTGCATCCCCAGAGAACGACACCCACATCCCGCCGTTCACCATACCTACTGCGAACATGTCAGAGGATGAACCTCGGGGT
ACGCCAGGCAGTCAAAGTTGCCCAACTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGAGTGGCCAAAAAAAAACATGCCACAGAGGCTGACTTTCGAGATACAATTGT
CACCCACTTGATGGAGGTACCAGAATTGGATAACCAAAAGAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTG
CTCTGAAGTTGGAGTACTGGGAACTCCTCCTGCACAAACATGGCTGA
Protein sequenceShow/hide protein sequence
MVRSCADSSLKCRSLRFCLCPAAISGVFEVVWHFCAVFAQFVSGSASISVFAPSRCSFKFETLLLDHPLPKDYSSASLEVRITRLTRKRVRLCALGGSFTCCPAAEKPYL
EPFGEHPLPVFEVLMELGASVPRWYLEACFDLRSVARNARVGWRSMALILCVDMNGQFVKSSKTHLDKERGREAGGVPRVLNLSASPENDTHIPPFTIPTANMSEDEPRG
TPGSQSCPTGRSSRGSKRKRVAKKKHATEADFRDTIVTHLMEVPELDNQKRVKLMDILFNNMKATESFFSIPAALKLEYWELLLHKHG