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Spg024196 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024196
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionHomeodomain-like superfamily protein
Genome locationscaffold4:18477599..18480412
RNA-Seq ExpressionSpg024196
SyntenySpg024196
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN46475.1 hypothetical protein Csa_005254 [Cucumis sativus]3.3e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

XP_008459822.1 PREDICTED: protein LHY-like isoform X1 [Cucumis melo]3.3e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

XP_008459828.1 PREDICTED: protein LHY-like isoform X2 [Cucumis melo]3.3e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

XP_011656825.1 protein LHY isoform X1 [Cucumis sativus]3.3e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

XP_031743530.1 protein LHY isoform X2 [Cucumis sativus]3.3e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

TrEMBL top hitse value%identityAlignment
A0A0A0K9R4 HTH myb-type domain-containing protein1.6e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

A0A1S3CB62 protein LHY-like isoform X11.6e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

A0A1S3CCB0 protein LHY-like isoform X21.6e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

A0A6J1DS79 protein LHY1.6e-32100Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

A0A6J1JSR5 protein LHY isoform X14.6e-3298.59Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        M+PNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

SwissProt top hitse value%identityAlignment
A0A0G3VTN5 Protein LATE ELONGATED HYPOCOTYL1.5e-3294.37Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MDP SSGE+LV KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFF+K
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

F4K5X6 Protein REVEILLE 23.1e-2579.1Show/hide
Query:  SSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        SS +    KTRKPYTITKQRE+WTE EH +F+EALKLYGRAW+RIEEH+GTKTAVQIRSHAQKFF+K
Subjt:  SSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

F4KGY6 Protein REVEILLE 13.1e-2575.71Show/hide
Query:  DPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        D +  G D   K RKPYTITK+RERWT+EEH +F+EALKLYGRAW+RIEEH+G+KTAVQIRSHAQKFFSK
Subjt:  DPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

P92973 Protein CCA12.9e-3188.73Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        M+ NSSGEDLV KTRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IEEH+ TKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

Q6R0H1 Protein LHY9.3e-3085.92Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQIRSHAQKFF+K
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

Arabidopsis top hitse value%identityAlignment
AT1G01060.1 Homeodomain-like superfamily protein6.6e-3185.92Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQIRSHAQKFF+K
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

AT1G01060.2 Homeodomain-like superfamily protein6.6e-3185.92Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQIRSHAQKFF+K
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

AT1G01060.3 Homeodomain-like superfamily protein6.6e-3185.92Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQIRSHAQKFF+K
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

AT1G01060.4 Homeodomain-like superfamily protein6.6e-3185.92Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQIRSHAQKFF+K
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

AT2G46830.1 circadian clock associated 12.1e-3288.73Show/hide
Query:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK
        M+ NSSGEDLV KTRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IEEH+ TKTAVQIRSHAQKFFSK
Subjt:  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCCAACTCCTCTGGAGAAGACTTGGTTTTTAAGACCAGGAAGCCATATACTATTACAAAACAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGA
GGCGTTGAAACTCTATGGCCGAGCATGGCAGAGAATTGAAGAACATATTGGAACGAAAACTGCAGTCCAGATACGAAGTCATGCACAGAAGTTCTTTTCAAAGGGTATTA
ATTACCAAACGCTTACTGAAAGCTCCAAGCTAACAGGAAAGATTGCACAGTTCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCCCAACTCCTCTGGAGAAGACTTGGTTTTTAAGACCAGGAAGCCATATACTATTACAAAACAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGA
GGCGTTGAAACTCTATGGCCGAGCATGGCAGAGAATTGAAGAACATATTGGAACGAAAACTGCAGTCCAGATACGAAGTCATGCACAGAAGTTCTTTTCAAAGGGTATTA
ATTACCAAACGCTTACTGAAAGCTCCAAGCTAACAGGAAAGATTGCACAGTTCAAATAG
Protein sequenceShow/hide protein sequence
MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKGINYQTLTESSKLTGKIAQFK