; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024207 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024207
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold4:18296333..18304466
RNA-Seq ExpressionSpg024207
SyntenySpg024207
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035081.1 hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa]5.7e-0548.24Show/hide
Query:  VQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRC-----LATLTHANQRIILNKQEFIVSSGLRSSYLGY
        +QG +SVL GTT LLTLKRV V+S+L      +P SL   +V  L         L+ LT+ + R+I  +Q+FIVSSGLR SYLG+
Subjt:  VQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRC-----LATLTHANQRIILNKQEFIVSSGLRSSYLGY

KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]1.2e-0750.57Show/hide
Query:  DNRAGPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY
        + + GPLVQ  +SVL GTT LL+ K V VNSVL     +    L PK   L  R+ +A  T+ + RI+ N+Q+FIVSSGLRSSYLG+
Subjt:  DNRAGPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY

KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]1.0e-0650.6Show/hide
Query:  GPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY
        GP VQ  +SVL GTT LLTLK V VNS+L    P+   SL  K             T+A+ RII  +QEF VSSGLR SYLG+
Subjt:  GPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY

TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.3e-0866.67Show/hide
Query:  YVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLG
        YVPSYP  L P+M GLL +R  A LT+A+ RI+LN+Q+FIVS GLRSSYLG
Subjt:  YVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLG

TrEMBL top hitse value%identityAlignment
A0A5A7U348 Uncharacterized protein5.9e-0850.57Show/hide
Query:  DNRAGPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY
        + + GPLVQ  +SVL GTT LL+ K V VNSVL     +    L PK   L  R+ +A  T+ + RI+ N+Q+FIVSSGLRSSYLG+
Subjt:  DNRAGPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY

A0A5D3BX92 Uncharacterized protein2.7e-0548.24Show/hide
Query:  VQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRC-----LATLTHANQRIILNKQEFIVSSGLRSSYLGY
        +QG +SVL GTT LLTLKRV V+S+L      +P SL   +V  L         L+ LT+ + R+I  +Q+FIVSSGLR SYLG+
Subjt:  VQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRC-----LATLTHANQRIILNKQEFIVSSGLRSSYLGY

A0A5D3CRT6 Uncharacterized protein5.0e-0750.6Show/hide
Query:  GPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY
        GP VQ  +SVL GTT LLTLK V VNS+L    P+   SL  K             T+A+ RII  +QEF VSSGLR SYLG+
Subjt:  GPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGY

A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass4.5e-0866.67Show/hide
Query:  YVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLG
        YVPSYP  L P+M GLL +R  A LT+A+ RI+LN+Q+FIVS GLRSSYLG
Subjt:  YVPSYPFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAAGAAGCCAAGGAACCGAAAAGAACCAAGTTGGAGGCTTCAAAAATGAGGCACATCCGAGAGCTAGCATTGAGACGCTGCTTTCTGGGCGTCTCGACGCTAGA
AAATTCCCCTAAAACAGAATGGGCGCTAGTAGAGGGACCTAATGGACCTACAGATCATGGGCTCCAACGAAATGATGATAACCGGGCGGGGCCCCTTGTTCAAGGCTCAG
AGTCAGTACTTAACGGAACAACCTCTTTACTAACCCTAAAACGGGTAGTAGTGAATTCCGTCTTGCAAAACTATGTCCCCAGCTATCCATTTAGTCTTATCCCCAAAATG
GTAGGCTTATTGAGTCGGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCT
AGGTTATATGTATGAGATGTTTAGTTTCAACAATAAACGGTGTTGTGTAGCTTCTGCAGTTGACGGAATCCGGCGAGTAACAGCGTATGGATCCAAAATCGTTGAATCTT
GGAGAAATTTGAAGTCTGCCCAGCAAGCATTATTTTGTTTTGGCTGTGACCGTGCAACGCTCGACCTCCGGCGGTTTGCTTCGTCCCCTCCGACGTGTTCGCAGGTCTGC
AGCGGTGGCCTTCATCCTTCGGTCGGCAGGATTAAGTGGTACTTGAGGGCGTTGGCGATTGGCGAGGGTCGTGGCTTGACTGGCTATGGGATTGCAGCTGCAAACTATGT
CATCTTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAAGAAGCCAAGGAACCGAAAAGAACCAAGTTGGAGGCTTCAAAAATGAGGCACATCCGAGAGCTAGCATTGAGACGCTGCTTTCTGGGCGTCTCGACGCTAGA
AAATTCCCCTAAAACAGAATGGGCGCTAGTAGAGGGACCTAATGGACCTACAGATCATGGGCTCCAACGAAATGATGATAACCGGGCGGGGCCCCTTGTTCAAGGCTCAG
AGTCAGTACTTAACGGAACAACCTCTTTACTAACCCTAAAACGGGTAGTAGTGAATTCCGTCTTGCAAAACTATGTCCCCAGCTATCCATTTAGTCTTATCCCCAAAATG
GTAGGCTTATTGAGTCGGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCT
AGGTTATATGTATGAGATGTTTAGTTTCAACAATAAACGGTGTTGTGTAGCTTCTGCAGTTGACGGAATCCGGCGAGTAACAGCGTATGGATCCAAAATCGTTGAATCTT
GGAGAAATTTGAAGTCTGCCCAGCAAGCATTATTTTGTTTTGGCTGTGACCGTGCAACGCTCGACCTCCGGCGGTTTGCTTCGTCCCCTCCGACGTGTTCGCAGGTCTGC
AGCGGTGGCCTTCATCCTTCGGTCGGCAGGATTAAGTGGTACTTGAGGGCGTTGGCGATTGGCGAGGGTCGTGGCTTGACTGGCTATGGGATTGCAGCTGCAAACTATGT
CATCTTTCCTTAG
Protein sequenceShow/hide protein sequence
MPKEAKEPKRTKLEASKMRHIRELALRRCFLGVSTLENSPKTEWALVEGPNGPTDHGLQRNDDNRAGPLVQGSESVLNGTTSLLTLKRVVVNSVLQNYVPSYPFSLIPKM
VGLLSRRCLATLTHANQRIILNKQEFIVSSGLRSSYLGYMYEMFSFNNKRCCVASAVDGIRRVTAYGSKIVESWRNLKSAQQALFCFGCDRATLDLRRFASSPPTCSQVC
SGGLHPSVGRIKWYLRALAIGEGRGLTGYGIAAANYVIFP