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Spg024208 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024208
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:20290898..20304569
RNA-Seq ExpressionSpg024208
SyntenySpg024208
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.4e-2960.77Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQ--------------TRFNV
        LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTS+ESS S+SSTWLEL  E V  +                FNV
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQ--------------TRFNV

Query:  SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        S+GST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.9e-2555.3Show/hide
Query:  LFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRF----NVSI---
        LFGLSY E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTS+ESS+S+SSTWLELY ESV  +  F    +V +   
Subjt:  LFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRF----NVSI---

Query:  ----GSTGIVRGDDVCWLHAVFRAKLAGGPGG
            GS GIVRGDD+CWLHAVF AK AG PGG
Subjt:  ----GSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]7.3e-2559.06Show/hide
Query:  LSYTEGIK--RPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIG
        +S  E +K   PRGNR SLQT ELDKT               V IELPVPD LPTS+ESS S+SSTWLELY ESV      +F  +        FNVS+G
Subjt:  LSYTEGIK--RPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIG

Query:  STGIVRGDDVCWLHAVFRAKLAGGPGG
        STGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  STGIVRGDDVCWLHAVFRAKLAGGPGG

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]2.2e-2938.49Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSSESSRSSS----STWLELYIESVTFQTRFNVSVESTGIVRGDDVCWLHAVFRA
        MTEILS +LY TVCT                  VEIELPVPDTLPTS+ES   +     S  L L++  +    RFNVSV S GI+RGDDVCWLHAVFRA
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSSESSRSSS----STWLELYIESVTFQTRFNVSVESTGIVRGDDVCWLHAVFRA

Query:  KLAGGPGGDVESVQIELGEYGPSMDKS-KWSQDYKGKAHA-------------KPAIAGSEINLSTSGFLFGLSYTEGIKRPRGN--RSSLQTGELDKTV
        K+AG P G V + Q +     P+  +S + S   +G+  A             +P IAG     S    ++G+   E +K+       SS    +++K V
Subjt:  KLAGGPGGDVESVQIELGEYGPSMDKS-KWSQDYKGKAHA-------------KPAIAGSEINLSTSGFLFGLSYTEGIKRPRGN--RSSLQTGELDKTV

Query:  E-----IELPVPDTLPTSSESSR--------------SSSSTWLEL---------YIESVTFQTRFNASVESTGIVRGDDVCWLHAVFRAKLAGGPGGGS
        E     I +   D      ++ +              +    +LEL         Y    T  +RFN SV ST IVRGDDVCWLHAVFRAK AGGPG G 
Subjt:  E-----IELPVPDTLPTSSESSR--------------SSSSTWLEL---------YIESVTFQTRFNASVESTGIVRGDDVCWLHAVFRAKLAGGPGGGS

Query:  EINL
         ++L
Subjt:  EINL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.0e-2663.79Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTS+ESS S+SSTWLELY ESV      +F  +        FNVS+GSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGG
        WLHAVFRAK  GGPGG
Subjt:  WLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein4.1e-2960.77Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQ--------------TRFNV
        LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTS+ESS S+SSTWLEL  E V  +                FNV
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQ--------------TRFNV

Query:  SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        S+GST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  SIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein9.4e-2655.3Show/hide
Query:  LFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRF----NVSI---
        LFGLSY E ++                       PRGNR +L TG+LDKTVEIELPVPDTLPTS+ESS+S+SSTWLELY ESV  +  F    +V +   
Subjt:  LFGLSYTEGIK----------------------RPRGNRSSLQTGELDKTVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRF----NVSI---

Query:  ----GSTGIVRGDDVCWLHAVFRAKLAGGPGG
            GS GIVRGDD+CWLHAVF AK AG PGG
Subjt:  ----GSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UT17 CCHC-type domain-containing protein3.6e-2559.06Show/hide
Query:  LSYTEGIK--RPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIG
        +S  E +K   PRGNR SLQT ELDKT               V IELPVPD LPTS+ESS S+SSTWLELY ESV      +F  +        FNVS+G
Subjt:  LSYTEGIK--RPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIG

Query:  STGIVRGDDVCWLHAVFRAKLAGGPGG
        STGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  STGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3C0X3 Retrotrans_gag domain-containing protein1.1e-2938.49Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSSESSRSSS----STWLELYIESVTFQTRFNVSVESTGIVRGDDVCWLHAVFRA
        MTEILS +LY TVCT                  VEIELPVPDTLPTS+ES   +     S  L L++  +    RFNVSV S GI+RGDDVCWLHAVFRA
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSSESSRSSS----STWLELYIESVTFQTRFNVSVESTGIVRGDDVCWLHAVFRA

Query:  KLAGGPGGDVESVQIELGEYGPSMDKS-KWSQDYKGKAHA-------------KPAIAGSEINLSTSGFLFGLSYTEGIKRPRGN--RSSLQTGELDKTV
        K+AG P G V + Q +     P+  +S + S   +G+  A             +P IAG     S    ++G+   E +K+       SS    +++K V
Subjt:  KLAGGPGGDVESVQIELGEYGPSMDKS-KWSQDYKGKAHA-------------KPAIAGSEINLSTSGFLFGLSYTEGIKRPRGN--RSSLQTGELDKTV

Query:  E-----IELPVPDTLPTSSESSR--------------SSSSTWLEL---------YIESVTFQTRFNASVESTGIVRGDDVCWLHAVFRAKLAGGPGGGS
        E     I +   D      ++ +              +    +LEL         Y    T  +RFN SV ST IVRGDDVCWLHAVFRAK AGGPG G 
Subjt:  E-----IELPVPDTLPTSSESSR--------------SSSSTWLEL---------YIESVTFQTRFNASVESTGIVRGDDVCWLHAVFRAKLAGGPGGGS

Query:  EINL
         ++L
Subjt:  EINL

A0A5D3CJX3 CCHC-type domain-containing protein1.4e-2663.79Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTS+ESS S+SSTWLELY ESV      +F  +        FNVS+GSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSSESSRSSSSTWLELYIESV------TFQTR--------FNVSIGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGG
        WLHAVFRAK  GGPGG
Subjt:  WLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTTCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGAGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTC
ACGCCGTATTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGAGTCAGTTCAGATAGAACTTGGAGAGTATGGTCCAAGTATGGATAAGAGTAAGTGGAGTCAG
GACTATAAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCC
AAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAAACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTTCTGAAAGTTCTAGATCAAGCT
CCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGCTTCAGTAGAGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAC
GCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCC
AAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAAACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTTCTGAAAGTTCTAGATCAAGCT
CCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAC
GCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCTGCTCAACTTCTCTTTGAGCATTGTGCAGAGGCTCAAAGGCTGCAAGAAATTCCTCCGCTTCTCTCCTT
CGGGTTTCTTCTTCTCGAAGGATTTCTCTTCTTGCCTTCTCTTCTTCAAGGAGTTGGAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTTCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGAGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTC
ACGCCGTATTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGAGTCAGTTCAGATAGAACTTGGAGAGTATGGTCCAAGTATGGATAAGAGTAAGTGGAGTCAG
GACTATAAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCC
AAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAAACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTTCTGAAAGTTCTAGATCAAGCT
CCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGCTTCAGTAGAGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAC
GCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCC
AAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAAACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTTCTGAAAGTTCTAGATCAAGCT
CCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAC
GCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCTGCTCAACTTCTCTTTGAGCATTGTGCAGAGGCTCAAAGGCTGCAAGAAATTCCTCCGCTTCTCTCCTT
CGGGTTTCTTCTTCTCGAAGGATTTCTCTTCTTGCCTTCTCTTCTTCAAGGAGTTGGAGTTTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRFNVSVESTGIVRGDDVCWLHAVFRAKLAGGPGGDVESVQIELGEYGPSMDKSKWSQ
DYKGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRFNASVESTGIVRGDDVCWLH
AVFRAKLAGGPGGGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSSESSRSSSSTWLELYIESVTFQTRFNVSIGSTGIVRGDDVCWLH
AVFRAKLAGGPGGAAQLLFEHCAEAQRLQEIPPLLSFGFLLLEGFLFLPSLLQGVGV