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Spg024216 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024216
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:17699315..17702101
RNA-Seq ExpressionSpg024216
SyntenySpg024216
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054351.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0960.56Show/hide
Query:  WPRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        WPR NR SLQT +L KT             PL TLSVLRDNDAVVEI+L VPDTL TSAESS S+SS+ ++
Subjt:  WPRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-1062.86Show/hide
Query:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        PRENR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S++ ++
Subjt:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]1.5e-0964.29Show/hide
Query:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        PRENR SLQT +L KT             PL TLSVLRDNDAVVEIELLVP+TLPTSAESS S+SS+ ++
Subjt:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

TYK18765.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-1062.86Show/hide
Query:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        PRENR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S++ ++
Subjt:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.6e-0958.54Show/hide
Query:  WPRENRSSLQTRKLAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        WPRENR SLQT +L KT       E +  R    V T  I PL TLSVLRDNDAVVEIEL VPDTLP+S ES  S+SS+ ++
Subjt:  WPRENRSSLQTRKLAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

TrEMBL top hitse value%identityAlignment
A0A5A7URC7 Gag/pol protein2.5e-1062.86Show/hide
Query:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        PRENR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S++ ++
Subjt:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein3.7e-0958.54Show/hide
Query:  WPRENRSSLQTRKLAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        WPRENR SLQT +L KT       E +  R    V T  I PL TLSVLRDNDAVVEIEL VPDTLP+S ES  S+SS+ ++
Subjt:  WPRENRSSLQTRKLAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

A0A5D3BRI2 Uncharacterized protein7.4e-1064.29Show/hide
Query:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        PRENR SLQT +L KT             PL TLSVLRDNDAVVEIELLVP+TLPTSAESS S+SS+ ++
Subjt:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

A0A5D3CMM1 Reverse transcriptase2.2e-0960.56Show/hide
Query:  WPRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        WPR NR SLQT +L KT             PL TLSVLRDNDAVVEI+L VPDTL TSAESS S+SS+ ++
Subjt:  WPRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

A0A5D3D5E2 Gag/pol protein2.5e-1062.86Show/hide
Query:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ
        PRENR SLQT +L KT             PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S++ ++
Subjt:  PRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSRSSSSSTIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTCGAGCTAAATCTGATGATAAGTTAATGGTTTTTGAAATGGAAAATAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGAGAAAGATAGAGGG
TAGCAGAGAAGCTCGAATCTGTGCTTTTTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAC
CCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTACTGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGATTCAGCAGGGTCAACAGAACCAGCAAGGATTACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTCGAGCTAAATCTGATGATAAGTTAATGGTTTTTGAAATGGAAAATAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGAGAAAGATAGAGGG
TAGCAGAGAAGCTCGAATCTGTGCTTTTTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGCCAAGAGAAAATAGGTCGAGTCTACAGACCAGGAAACTAGCAAAGACAC
CCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTACTGGTGCCTGATACA
CTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGATTCAGCAGGGTCAACAGAACCAGCAAGGATTACCCTAG
Protein sequenceShow/hide protein sequence
MKEARAKSDDKLMVFEMENRAQDFRANQEDLWRKIEGSREARICAFCVRGISGQIGWPRENRSSLQTRKLAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELLVPDT
LPTSAESSRSSSSSTIQQGQQNQQGLP