; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024223 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024223
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold4:20889960..20910481
RNA-Seq ExpressionSpg024223
SyntenySpg024223
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-3662.99Show/hide
Query:  QRGGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIE
        Q  G+ +NL     LFGL Y EG KRPRGNR+SLQTGELDKT              LSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTWLEL  E
Subjt:  QRGGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIE

Query:  SVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
         V  +                FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  SVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-3266.14Show/hide
Query:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG
        RGNRSSLQ+GELD T              LSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VG
Subjt:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG

Query:  STGIVRGDDVCWLHAVFRAKLAGGPGG
        STGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  STGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]8.6e-3161.19Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS------
        +S  E ++ PRGNRSSLQTGELDKT              LSTLSVL DN+A+VEIELPVPDTLPTSAES  S+SSTWLELY E V  +  F         
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS------

Query:  -----VGSTGIVRGDDVCWLHAVFRAKLAGGPGG
              GS GIVRGDDVCWLH VFRAK+AGGPGG
Subjt:  -----VGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.7e-3260.4Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSV
        PRGNR SLQTGELDKT              LSTLSVLRDN+A+  IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSV
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGAARSFTLSPLRFRFRLASSIF
        GSTGIVRGDDVCWLHAVFRAK  GGPGG   ++  S  R +    S  F
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGAARSFTLSPLRFRFRLASSIF

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.0e-3266.14Show/hide
Query:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG
        RGNRSSLQ+GELD T              LSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VG
Subjt:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG

Query:  STGIVRGDDVCWLHAVFRAKLAGGPGG
        STGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  STGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.1e-3762.99Show/hide
Query:  QRGGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIE
        Q  G+ +NL     LFGL Y EG KRPRGNR+SLQTGELDKT              LSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTWLEL  E
Subjt:  QRGGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIE

Query:  SVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
         V  +                FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  SVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase2.9e-3266.14Show/hide
Query:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG
        RGNRSSLQ+GELD T              LSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VG
Subjt:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG

Query:  STGIVRGDDVCWLHAVFRAKLAGGPGG
        STGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  STGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VIY9 Uncharacterized protein4.2e-3161.19Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS------
        +S  E ++ PRGNRSSLQTGELDKT              LSTLSVL DN+A+VEIELPVPDTLPTSAES  S+SSTWLELY E V  +  F         
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS------

Query:  -----VGSTGIVRGDDVCWLHAVFRAKLAGGPGG
              GS GIVRGDDVCWLH VFRAK+AGGPGG
Subjt:  -----VGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein1.3e-3260.4Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSV
        PRGNR SLQTGELDKT              LSTLSVLRDN+A+  IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSV
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGAARSFTLSPLRFRFRLASSIF
        GSTGIVRGDDVCWLHAVFRAK  GGPGG   ++  S  R +    S  F
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGAARSFTLSPLRFRFRLASSIF

A0A5D3DSY7 Putative Retrotransposon protein2.9e-3266.14Show/hide
Query:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG
        RGNRSSLQ+GELD T              LSTLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VG
Subjt:  RGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVG

Query:  STGIVRGDDVCWLHAVFRAKLAGGPGG
        STGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  STGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
Q9SEZ6 Ribonuclease H2 subunit A3.3e-0946.97Show/hide
Query:  GPMVYGCLYYASFYFEELLS-EFCSLKNVERREDGGIVKNLRANESIGWVVDVIDPREFSAKMLSK
        GPMVYGC+Y    Y   L S  F   K ++  +   + ++L+ ++S+GW VDVIDPRE SAKML+K
Subjt:  GPMVYGCLYYASFYFEELLS-EFCSLKNVERREDGGIVKNLRANESIGWVVDVIDPREFSAKMLSK

Arabidopsis top hitse value%identityAlignment
AT2G25100.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-1046.97Show/hide
Query:  GPMVYGCLYYASFYFEELLS-EFCSLKNVERREDGGIVKNLRANESIGWVVDVIDPREFSAKMLSK
        GPMVYGC+Y    Y   L S  F   K ++  +   + ++L+ ++S+GW VDVIDPRE SAKML+K
Subjt:  GPMVYGCLYYASFYFEELLS-EFCSLKNVERREDGGIVKNLRANESIGWVVDVIDPREFSAKMLSK

AT2G25100.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-1044.29Show/hide
Query:  GPMVYGCLYYASFYFEELLS-EFCSLKNVERREDGGIVKNLRANESIGWVVDVIDPREFSAKMLSKEINV
        GPMVYGC+Y    Y   L S  F   K ++  +   + ++L+ ++S+GW VDVIDPRE SAKML+K +++
Subjt:  GPMVYGCLYYASFYFEELLS-EFCSLKNVERREDGGIVKNLRANESIGWVVDVIDPREFSAKMLSKEINV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGGCCTCGTGTTGCATACTAACGCAACTGTTCCATTCGGAAGGATCTTTGAGCTTAGGAAATGTCGGGAGTCAACCACGCTAATTCGGTGTCTTGGACAGCGAGG
AGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTATACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAG
ATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCAGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGG
GTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCCGCACGATCCTTCACCCTCAGCCCTC
TGCGTTTTCGGTTTCGACTGGCCAGCAGCATCTTCCTCTCATTCTATCGTGATTTTCCAGCCCCAAGAACTTCTCTTCTTATTCGTGTATACCACGACCATCGCCCTGTT
TTCTTATTCTTCTTCGTGAGCCTCCCTCTGCAACAAACCGTTCCCTTCTTCGATTCGACCAGCCCTCCCTTCACCTCCCTTCGCGACTCCTCCTCCGGCGAGCTCGGGAC
CACTATGGCGAACGGCGAGCTTGGGACCACGGCGGCGGACAACAGCTGGGCAGACCGTTTCCAGCGAGTTTGCGCGCGATTTAAAGGGCCAATGGTGTATGGATGCCTGT
ACTATGCTAGTTTTTATTTTGAAGAACTCTTGTCTGAATTTTGCAGCCTCAAAAACGTTGAAAGAAGAGAAGATGGAGGAATTGTTAAAAATTTGAGGGCTAATGAATCT
ATTGGATGGGTTGTTGATGTCATAGATCCACGGGAGTTTTCAGCCAAAATGCTAAGCAAAGAAATTAATGTTGAGCGACTTCAGGGAGCAAAATCCTTGATCCAGCAAAG
CTGGGAGCAAAACTGGCCACGTGACCTGCACAATGCGACCTACTTTGCGAATGAGGCAAACGACATGATCCTGGATCGTTCATGTAAGAGACATGGAAAAGCTCATGCAA
AGCCAACCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAA
ACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCATGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGACATG
GGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATC
AAGGAGAAGTAGATGAGTGTTGTTCATTAGAGGAGCACTGGTCTATATCCTTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTAGAGATCGAGCTCCCAGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGG
GTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAGGGAAGAAAAAGGCTGAAAGATTAG
AGCCGATAAAGCTTGAGGATAGCAAGGAAGATCCAGTGGTG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGGCCTCGTGTTGCATACTAACGCAACTGTTCCATTCGGAAGGATCTTTGAGCTTAGGAAATGTCGGGAGTCAACCACGCTAATTCGGTGTCTTGGACAGCGAGG
AGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTATACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAG
ATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCAGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGG
GTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCCGCACGATCCTTCACCCTCAGCCCTC
TGCGTTTTCGGTTTCGACTGGCCAGCAGCATCTTCCTCTCATTCTATCGTGATTTTCCAGCCCCAAGAACTTCTCTTCTTATTCGTGTATACCACGACCATCGCCCTGTT
TTCTTATTCTTCTTCGTGAGCCTCCCTCTGCAACAAACCGTTCCCTTCTTCGATTCGACCAGCCCTCCCTTCACCTCCCTTCGCGACTCCTCCTCCGGCGAGCTCGGGAC
CACTATGGCGAACGGCGAGCTTGGGACCACGGCGGCGGACAACAGCTGGGCAGACCGTTTCCAGCGAGTTTGCGCGCGATTTAAAGGGCCAATGGTGTATGGATGCCTGT
ACTATGCTAGTTTTTATTTTGAAGAACTCTTGTCTGAATTTTGCAGCCTCAAAAACGTTGAAAGAAGAGAAGATGGAGGAATTGTTAAAAATTTGAGGGCTAATGAATCT
ATTGGATGGGTTGTTGATGTCATAGATCCACGGGAGTTTTCAGCCAAAATGCTAAGCAAAGAAATTAATGTTGAGCGACTTCAGGGAGCAAAATCCTTGATCCAGCAAAG
CTGGGAGCAAAACTGGCCACGTGACCTGCACAATGCGACCTACTTTGCGAATGAGGCAAACGACATGATCCTGGATCGTTCATGTAAGAGACATGGAAAAGCTCATGCAA
AGCCAACCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAA
ACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCATGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGACATG
GGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATC
AAGGAGAAGTAGATGAGTGTTGTTCATTAGAGGAGCACTGGTCTATATCCTTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTAGAGATCGAGCTCCCAGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGG
GTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAGGGAAGAAAAAGGCTGAAAGATTAG
AGCCGATAAAGCTTGAGGATAGCAAGGAAGATCCAGTGGTG
Protein sequenceShow/hide protein sequence
MLGLVLHTNATVPFGRIFELRKCRESTTLIRCLGQRGGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIQLSTLSVLRDNDAIVEIELPV
PDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGAARSFTLSPLRFRFRLASSIFLSFYRDFPAPRTSLLIRVYHDHRPV
FLFFFVSLPLQQTVPFFDSTSPPFTSLRDSSSGELGTTMANGELGTTAADNSWADRFQRVCARFKGPMVYGCLYYASFYFEELLSEFCSLKNVERREDGGIVKNLRANES
IGWVVDVIDPREFSAKMLSKEINVERLQGAKSLIQQSWEQNWPRDLHNATYFANEANDMILDRSCKRHGKAHAKPTIAGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQ
TGELDKTPEAIWYHVHTGYIPLSTLSVLRDNDAVVTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHQGEVDECCSLEEHWSISLDTEMFYSEKSSAVEIELPV
PDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGEGKKKAERLEPIKLEDSKEDPVV