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Spg024244 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024244
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:22212805..22214739
RNA-Seq ExpressionSpg024244
SyntenySpg024244
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.4e-0761.67Show/hide
Query:  LVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT
        +VEIELPV DTLP SAESS S+S S         + EDDV WLH +FR + AGGPGGGVT
Subjt:  LVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.8e-0753.95Show/hide
Query:  VVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT
        V+  L   S++     +VEIELPV DTLPTSAES  S+S ST        +  DDV WLHA+FR + AGGPGGGVT
Subjt:  VVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-0844.34Show/hide
Query:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG
        ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+SS+    + E   + +        EDDV WLHA+FR + AG
Subjt:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG

Query:  GPGGGV
        GPGGGV
Subjt:  GPGGGV

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]1.8e-0750Show/hide
Query:  TYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT
        T V+      S+++    +VEIELPV DTLPTSAESS S+S S         +  DDV WLH++FR + A GPGGGVT
Subjt:  TYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-0844.34Show/hide
Query:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG
        ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+SS+    + E   + +        EDDV WLHA+FR + AG
Subjt:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG

Query:  GPGGGV
        GPGGGV
Subjt:  GPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase1.3e-0844.34Show/hide
Query:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG
        ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+SS+    + E   + +        EDDV WLHA+FR + AG
Subjt:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG

Query:  GPGGGV
        GPGGGV
Subjt:  GPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein8.7e-0853.95Show/hide
Query:  VVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT
        V+  L   S++     +VEIELPV DTLPTSAES  S+S ST        +  DDV WLHA+FR + AGGPGGGVT
Subjt:  VVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein6.6e-0861.67Show/hide
Query:  LVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT
        +VEIELPV DTLP SAESS S+S S         + EDDV WLH +FR + AGGPGGGVT
Subjt:  LVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT

A0A5D3CU23 Retrotrans_gag domain-containing protein8.7e-0850Show/hide
Query:  TYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT
        T V+      S+++    +VEIELPV DTLPTSAESS S+S S         +  DDV WLH++FR + A GPGGGVT
Subjt:  TYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEGQRISLEEDDVHWLHAIFRTELAGGPGGGVT

A0A5D3DX39 Reverse transcriptase1.3e-0844.34Show/hide
Query:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG
        ++ S  L+G V   + FP       L   S++     +VEIELPV DTLPTSAESS S+SS+    + E   + +        EDDV WLHA+FR + AG
Subjt:  QVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSS---TFQEGQRISL-------EEDDVHWLHAIFRTELAG

Query:  GPGGGV
        GPGGGV
Subjt:  GPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTTTAGCTAAATGTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTT
TCGCACATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTACGTTGTAGAGTGTTTGAAACTGAAGAGTT
TGATGTATAGTACATTAATTTTGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTTCAGGAGGGT
CAACGGATATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTTCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACTAACACAGGGGCGTAGGTG
CGAGGGTTTTCGCAAACCGTTTCCCATCTGCGTTGGGAAATCTGTTCTGTCATCGTCTGCGGGAGGGTGCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTTTAGCTAAATGTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTT
TCGCACATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGTACGTTGTAGAGTGTTTGAAACTGAAGAGTT
TGATGTATAGTACATTAATTTTGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTTCAGGAGGGT
CAACGGATATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTTCGGACTGAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACTAACACAGGGGCGTAGGTG
CGAGGGTTTTCGCAAACCGTTTCCCATCTGCGTTGGGAAATCTGTTCTGTCATCGTCTGCGGGAGGGTGCAGCTGA
Protein sequenceShow/hide protein sequence
MKEALAKCDDKLMVFEMENRAQDFRANQEDLWFSLVFRTLWGVQVESEALFGMVGKLIQFPTTYVVECLKLKSLMYSTLILVEIELPVLDTLPTSAESSSSSSSSTFQEG
QRISLEEDDVHWLHAIFRTELAGGPGGGVTLTQGRRCEGFRKPFPICVGKSVLSSSAGGCS