; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024251 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024251
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:17791145..17802111
RNA-Seq ExpressionSpg024251
SyntenySpg024251
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157708.1 uncharacterized protein LOC111024361 [Momordica charantia]1.2e-1641.45Show/hide
Query:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLS-----------------SLEVPPLGFAS-KSNSQEKKSNLVEMVALFIKEEKVLNVNLQ
        S+QWP+ER+  KK AG+YE+D+ SSLKAQ+ +LT A++KLS                 S   P +  A   S+  EKKS+L +++  FI E +     ++
Subjt:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLS-----------------SLEVPPLGFAS-KSNSQEKKSNLVEMVALFIKEEKVLNVNLQ

Query:  TTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
          V  +   +  +  ++KNMEVQ+GQIA  +N +QKGKFPSD EV  RE CK
Subjt:  TTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

XP_022851217.1 uncharacterized protein LOC111373002 [Olea europaea var. sylvestris]9.7e-1133.52Show/hide
Query:  VVSHIVTRISYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSS---------------------------LEVPPLGFASKSN---------
        ++  IVT  S+QWP+ER+  KK AG+YE+D  ++L AQM+SLT  +  L+S                             V    F  K N         
Subjt:  VVSHIVTRISYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSS---------------------------LEVPPLGFASKSN---------

Query:  ----SQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKC
            + E+K +L +++  FI E +      +  ++++ T + N    +KN+EVQ+GQIAT +   QKG+FPSDTEVN RE C
Subjt:  ----SQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKC

XP_023899824.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112011709 [Quercus suber]9.7e-1130.85Show/hide
Query:  VTRISYQWPTERAPMKK-AGIYELDDSSSLKAQMTSL------------------------TRAMNKLSSLEV---------------------------
        +T  +YQWPTER   KK AGI+EL+  ++L AQ+ SL                        T  MN++S  +V                           
Subjt:  VTRISYQWPTERAPMKK-AGIYELDDSSSLKAQMTSL------------------------TRAMNKLSSLEV---------------------------

Query:  ------------PPLGFASKSNSQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKC
                    PPLGF S+ +  EKK +L + +  F++E K       + ++ + T  +N    +KN+EVQ+GQ+AT +N  Q+G FPS+TEVN +E+C
Subjt:  ------------PPLGFASKSNSQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKC

Query:  K
        K
Subjt:  K

XP_023913136.1 uncharacterized protein LOC112024733 [Quercus suber]3.2e-1435.37Show/hide
Query:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP-------------PLGFASK-----------------SNSQEKKSNLVEMVALF
        +YQWPTER   KK AGI+EL+  ++L AQ TSL+  +  L++  +P             P+  AS+                 S   EKK +L +    F
Subjt:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP-------------PLGFASK-----------------SNSQEKKSNLVEMVALF

Query:  IKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
        ++E K       + ++ + T  +N +  +KN+EVQ+GQ+AT +N  Q+G FPS+TEVNL+E+CK
Subjt:  IKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

XP_030923419.1 uncharacterized protein LOC115950351 [Quercus lobata]5.1e-1233.33Show/hide
Query:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEV-------------------------------PPLGFASKSNSQEKKSNLVEMVAL
        +YQWPTER   KK AGI+ELD  ++L AQ+ SL+  +  +++                                  PP GF S+ +  EKK +L + +  
Subjt:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEV-------------------------------PPLGFASKSNSQEKKSNLVEMVAL

Query:  FIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
        F++E K       + ++ + T  +N    +KN+EVQ+GQ+AT +N  Q+G FPS+T+VN +E+CK
Subjt:  FIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

TrEMBL top hitse value%identityAlignment
A0A061EW79 Retrotrans_gag domain-containing protein4.8e-0831.54Show/hide
Query:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP---------------PLGFASKSNSQEKKSNLVEMVALFIKEEKVLNVNLQTTV
        +YQWP+ER   +K AG++ELD  +++  Q+TS  + ++KLS   V                PLGF S++   EKK ++ ++   F+           T  
Subjt:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP---------------PLGFASKSNSQEKKSNLVEMVALFIKEEKVLNVNLQTTV

Query:  NTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
        N     + N   +++N+E+Q+GQ+A+ +N+  +G  PSDTE N R + K
Subjt:  NTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

A0A2I4F4C8 uncharacterized protein LOC1089953733.1e-0730.14Show/hide
Query:  VTRISYQWPTERAPMKKAGIYELDDSSSLKAQ---MTSLTRAMNKLSSLEVPPLGFASKS----NSQEKKSN--LVEMVALFIKEEKVLNVNLQTTVNTL
        +T  +YQWPTE+   KK     +   ++ + Q    TS+    N+ S  +V  +   + +    +SQ+ K N  L + +  F++E         + ++ +
Subjt:  VTRISYQWPTERAPMKKAGIYELDDSSSLKAQ---MTSLTRAMNKLSSLEVPPLGFASKS----NSQEKKSN--LVEMVALFIKEEKVLNVNLQTTVNTL

Query:  LTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
            +N   A+KN+EVQ+G++AT++N  Q+G FPS+TE N +E+CK
Subjt:  LTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

A0A6J1DU19 uncharacterized protein LOC1110243615.7e-1741.45Show/hide
Query:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLS-----------------SLEVPPLGFAS-KSNSQEKKSNLVEMVALFIKEEKVLNVNLQ
        S+QWP+ER+  KK AG+YE+D+ SSLKAQ+ +LT A++KLS                 S   P +  A   S+  EKKS+L +++  FI E +     ++
Subjt:  SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLS-----------------SLEVPPLGFAS-KSNSQEKKSNLVEMVALFIKEEKVLNVNLQ

Query:  TTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
          V  +   +  +  ++KNMEVQ+GQIA  +N +QKGKFPSD EV  RE CK
Subjt:  TTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

A0A6P9DWY0 uncharacterized protein LOC1183440263.3e-0927.44Show/hide
Query:  TSVSNTKRVVSHIVTRI---SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP-------------PLGFASK--------------
        T +S T    ++++  +   +YQWP ER   KK AGI+EL+  ++L AQ+ SL+  ++ L++  +P             P   AS+              
Subjt:  TSVSNTKRVVSHIVTRI---SYQWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP-------------PLGFASK--------------

Query:  ----------------------------------SNSQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKG
                                          S   EKK +L + +  F++E         + ++ + T  +N   A+KN+EVQ+GQ+AT +N  Q+G
Subjt:  ----------------------------------SNSQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKG

Query:  KFPSDTEVNLREKCK
         FPS+TEVN RE+CK
Subjt:  KFPSDTEVNLREKCK

A0A6P9E7J9 uncharacterized protein LOC1183442385.7e-0930.25Show/hide
Query:  QWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP-------------PLGFASK-----------------SNSQEKKSNLVEMVALFIK
        QWPTER   KK  GI+EL+  ++L AQ  +L+  ++ L++  +P             P   AS+                 S S EK  +L + +  F++
Subjt:  QWPTERAPMKK-AGIYELDDSSSLKAQMTSLTRAMNKLSSLEVP-------------PLGFASK-----------------SNSQEKKSNLVEMVALFIK

Query:  EEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK
        E       + + +  + T  +N +  +KN+EVQ+GQ+AT +N  Q+G  P +T+VN  E+CK
Subjt:  EEKVLNVNLQTTVNTLLTSVNNHDVALKNMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCGAGACTGCTGGCGGATGTTTTTGAGAATATGATTCGGTTGGCAGTAGCACGAGTTCTTATTATTTTTGAAGGATACATAGTTGAGCAGGATGTTTTGGATGA
ATTCAGGGCTAAAAGAGAAGAACAACATAGAGAAATTTGGTGCATGAAGACCGATGAGGAGTTGAGTAAAAAGAGAGCTGTAGAGGATGAAGATAAAAAGAGAAAAAATG
AGAGAAAAAGGAAAGAGCAGGAAGAAAGACAGGAGGCCGAGAGGGCCATGAGAGAAGAAGATGAAAGAATGAAAAGAGAGGAGGCCGAGAGGGCCAAAGAAGAAGAAGAG
GAAATTGTAAAGGGTATACTAGATGCCCTAGTTTATTGTATTTTTACATGTGTTGGCACTTGTCTTACTTACAGATGCCCCGACATAGAAGGTGAACTGTTTGATGTAGT
TGATGAGCACCAGATAACCTTTACTGATAAATCTAGTGGGATCACCAAGTGCTCGAGCTTTTATTGGATTTTTAGAGAAATTGGAGAGGAAAAGAAGCCCAATTATGAAG
AATTAATCATGGAGATGCAAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTC
CATCTTGTACTGTTATGCTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTCGATCATTGCATCTGTATCGAA
TACAAGGTGGGTCGTATCACATAGTGTCACCAGAATAAGAACCCGTTATGAGCTAGCAAGTGGACCTAATGGACCTACAGATCAGAAGCTTCAACGATACGAGATTGATC
AGCTAAACTCATTAATCGACCCCCCACTCGGTCTTGTCCCCAAGAAGGATACCCCCGCTCCCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACA
AAGCGGGTCGTATCACATATTGTTACCAGGATAAGTTATCAATGGCCCACGGAGAGGGCACCAATGAAAAAGGCTGGAATATATGAGCTGGATGATTCAAGTTCATTGAA
AGCGCAGATGACTTCCTTAACAAGAGCCATGAACAAGCTTTCATCTTTAGAGGTGCCACCCCTAGGTTTTGCATCAAAATCAAATTCTCAAGAGAAGAAAAGCAACCTAG
TGGAAATGGTGGCGCTCTTCATCAAAGAAGAAAAGGTTTTGAATGTAAATCTCCAGACGACAGTGAACACTCTGTTAACTTCGGTGAATAACCATGACGTTGCTCTAAAG
AACATGGAGGTCCAACTGGGACAGATTGCAACTGTAGTGAATGTCCTTCAGAAGGGTAAGTTCCCTAGCGACACGGAAGTAAATCTAAGGGAGAAATGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCGAGACTGCTGGCGGATGTTTTTGAGAATATGATTCGGTTGGCAGTAGCACGAGTTCTTATTATTTTTGAAGGATACATAGTTGAGCAGGATGTTTTGGATGA
ATTCAGGGCTAAAAGAGAAGAACAACATAGAGAAATTTGGTGCATGAAGACCGATGAGGAGTTGAGTAAAAAGAGAGCTGTAGAGGATGAAGATAAAAAGAGAAAAAATG
AGAGAAAAAGGAAAGAGCAGGAAGAAAGACAGGAGGCCGAGAGGGCCATGAGAGAAGAAGATGAAAGAATGAAAAGAGAGGAGGCCGAGAGGGCCAAAGAAGAAGAAGAG
GAAATTGTAAAGGGTATACTAGATGCCCTAGTTTATTGTATTTTTACATGTGTTGGCACTTGTCTTACTTACAGATGCCCCGACATAGAAGGTGAACTGTTTGATGTAGT
TGATGAGCACCAGATAACCTTTACTGATAAATCTAGTGGGATCACCAAGTGCTCGAGCTTTTATTGGATTTTTAGAGAAATTGGAGAGGAAAAGAAGCCCAATTATGAAG
AATTAATCATGGAGATGCAAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAGCCCTTAAGGGAACACACATCTACTTACCCCAATAGGGGAAGGAGTGAATTC
CATCTTGTACTGTTATGCTCCCAGCCCCCATTCGGTCTTGCCCCTGAAATGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTCGATCATTGCATCTGTATCGAA
TACAAGGTGGGTCGTATCACATAGTGTCACCAGAATAAGAACCCGTTATGAGCTAGCAAGTGGACCTAATGGACCTACAGATCAGAAGCTTCAACGATACGAGATTGATC
AGCTAAACTCATTAATCGACCCCCCACTCGGTCTTGTCCCCAAGAAGGATACCCCCGCTCCCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACA
AAGCGGGTCGTATCACATATTGTTACCAGGATAAGTTATCAATGGCCCACGGAGAGGGCACCAATGAAAAAGGCTGGAATATATGAGCTGGATGATTCAAGTTCATTGAA
AGCGCAGATGACTTCCTTAACAAGAGCCATGAACAAGCTTTCATCTTTAGAGGTGCCACCCCTAGGTTTTGCATCAAAATCAAATTCTCAAGAGAAGAAAAGCAACCTAG
TGGAAATGGTGGCGCTCTTCATCAAAGAAGAAAAGGTTTTGAATGTAAATCTCCAGACGACAGTGAACACTCTGTTAACTTCGGTGAATAACCATGACGTTGCTCTAAAG
AACATGGAGGTCCAACTGGGACAGATTGCAACTGTAGTGAATGTCCTTCAGAAGGGTAAGTTCCCTAGCGACACGGAAGTAAATCTAAGGGAGAAATGCAAGTGA
Protein sequenceShow/hide protein sequence
MKARLLADVFENMIRLAVARVLIIFEGYIVEQDVLDEFRAKREEQHREIWCMKTDEELSKKRAVEDEDKKRKNERKRKEQEERQEAERAMREEDERMKREEAERAKEEEE
EIVKGILDALVYCIFTCVGTCLTYRCPDIEGELFDVVDEHQITFTDKSSGITKCSSFYWIFREIGEEKKPNYEELIMEMQGEDDAPLFKPRNQPLREHTSTYPNRGRSEF
HLVLLCSQPPFGLAPEMDTPTRMSPTWMLSIIASVSNTRWVVSHSVTRIRTRYELASGPNGPTDQKLQRYEIDQLNSLIDPPLGLVPKKDTPAPMSPTWTPWINTSVSNT
KRVVSHIVTRISYQWPTERAPMKKAGIYELDDSSSLKAQMTSLTRAMNKLSSLEVPPLGFASKSNSQEKKSNLVEMVALFIKEEKVLNVNLQTTVNTLLTSVNNHDVALK
NMEVQLGQIATVVNVLQKGKFPSDTEVNLREKCK