CuGenDBv2

Gene ID	Spg024258
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Genome location	scaffold4:20588236..20591211
RNA-Seq Expression	Spg024258
Synteny	Spg024258
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG5558428.1 hypothetical protein RHGRI_008383 [Rhododendron griersonianum]

3.5e-39

79.65

Show/hide

Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVRIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK
        V EN CKFAKKG+TPSQIGV + DSH IAQ+KSVTGSKILRL    APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVRIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK

Query:  LPPCLDVISILRH
        LPP    +S L H
Subjt:  LPPCLDVISILRH

MBA0719002.1 hypothetical protein [Gossypium laxum]

2.1e-39

82.41

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Query:  TIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYY
        T+QV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYY
Subjt:  TIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYY

Query:  KKTKKLPP
        KKTKKLPP
Subjt:  KKTKKLPP

OWM71868.1 hypothetical protein CDL15_Pgr017751 [Punica granatum]

7.1e-40

82.57

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Query:  LTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARY
        ++IQV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARY
Subjt:  LTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARY

Query:  YKKTKKLPP
        YKKTKKLPP
Subjt:  YKKTKKLPP

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

4.6e-39

84.76

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]

4.6e-39

84.76

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

TrEMBL top hits

e value

%identity

Alignment

A0A218WH84 Ribosomal_S13_N domain-containing protein

3.4e-40

82.57

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Query:  LTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARY
        ++IQV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARY
Subjt:  LTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARY

Query:  YKKTKKLPP
        YKKTKKLPP
Subjt:  YKKTKKLPP

A0A6J1CQC4 40S ribosomal protein S13-like

2.2e-39

84.76

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

A0A6J1HJL3 40S ribosomal protein S13-like

2.2e-39

84.76

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

A0A6J1KV63 40S ribosomal protein S13-like

2.2e-39

84.76

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        VAEN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

A0A7J9A571 Ribosomal_S13_N domain-containing protein

1.0e-39

82.41

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Query:  TIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYY
        T+QV EN CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYY
Subjt:  TIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYY

Query:  KKTKKLPP
        KKTKKLPP
Subjt:  KKTKKLPP

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

1.6e-39

81.9

Show/hide

Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V E  CKFAKKGLTPSQIGV + DSH IAQ+KSVTGSKILR++    +APEI EDLYHLIKK VSIRKHLER RKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

P59223 40S ribosomal protein S13-1

9.6e-40

80.95

Show/hide

Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

P59224 40S ribosomal protein S13-2

9.6e-40

80.95

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

P62302 40S ribosomal protein S13

8.7e-41

82.86

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Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V EN CKFAKKGLTPSQIGV + DSH IAQ+ SVTGSKILR++    +APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

Q69UI2 40S ribosomal protein S13-1

1.8e-33

73.33

Show/hide

Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V E   K AKKG  PSQIGV + D H I  +KSVTGSKILR++    +APEI EDLY LIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYK+T
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

6.8e-41

80.95

Show/hide

Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

AT4G00100.1 ribosomal protein S13A

6.8e-41

80.95

Show/hide

Query:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT
        V E+ CKFAKKGLTPSQIGV + DSH I Q+KSVTGSKILR++    +APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKT
Subjt:  VAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVR--IAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKT

Query:  KKLPP
        KKLPP
Subjt:  KKLPP

Sequences

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CDS sequence

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ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGTCGTTGATTTTAGTGAAGCATAAAATTGATGGCTTTCCTTTGACCATTCAAGT
TGCCGAGAACTTTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATAGGTGTTACTGTCTATGATTCTCACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCA
AGATCTTAAGGCTCATGGTGAGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGAC
AAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACGTAATAAGTATTTT
AAGGCACAAAAGCACGTGA

mRNA sequence

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Protein sequence

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MNCVVLFLLLDMLFTRVLQSLILVKHKIDGFPLTIQVAENFCKFAKKGLTPSQIGVTVYDSHRIAQMKSVTGSKILRLMVRIAPEISEDLYHLIKKVVSIRKHLERNRKD
KDSKFRLILVESRIHHLARYYKKTKKLPPCLDVISILRHKST

Spg024258 (gene) of Sponge gourd (cylindrica) v1 genome