CuGenDBv2

Gene ID	Spg024299
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	syndetin isoform X2
Genome location	scaffold4:16679023..16679576
RNA-Seq Expression	Spg024299
Synteny	Spg024299
Gene Ontology terms	GO:0032456 - endocytic recycling (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:1990745 - EARP complex (cellular component)
InterPro domains	IPR040047 - Syndetin

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011654229.1 syndetin isoform X3 [Cucumis sativus]

2.0e-36

68.18

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Query:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG
        NVSS+G  GI NS+YMD GD NRESR DSS  STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF LAG
Subjt:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG

Query:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        EAFCGVEAVEFRQKLK+VCENYYV FHKQSMH
Subjt:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_022152900.1 syndetin isoform X1 [Momordica charantia]

1.1e-39

72.18

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Query:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA
        TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LA
Subjt:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA

Query:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        GEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_022152901.1 syndetin isoform X2 [Momordica charantia]

1.1e-39

72.18

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Query:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA
        TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LA
Subjt:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA

Query:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        GEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_038895533.1 syndetin isoform X1 [Benincasa hispida]

1.5e-39

71.97

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Query:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG
        NVSS+G+TGI NSVYMDGGD NRESR DSST STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Subjt:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG

Query:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_038895534.1 syndetin isoform X2 [Benincasa hispida]

1.5e-39

71.97

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Query:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG
        NVSS+G+TGI NSVYMDGGD NRESR DSST STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Subjt:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG

Query:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVM9 Uncharacterized protein

9.6e-37

68.18

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Query:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG
        NVSS+G  GI NS+YMD GD NRESR DSS  STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF LAG
Subjt:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG

Query:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        EAFCGVEAVEFRQKLK+VCENYYV FHKQSMH
Subjt:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A5A7VC68 Syndetin

2.1e-36

67.42

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Query:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG
        +VSS+G+TGI +S+YMD GD  RESR DSS  STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Subjt:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG

Query:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        EAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Subjt:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A5D3CVZ5 Syndetin

2.1e-36

67.42

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Query:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG
        +VSS+G+TGI +S+YMD GD  RESR DSS  STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Subjt:  NVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG

Query:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        EAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Subjt:  EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A6J1DF95 syndetin isoform X1

5.4e-40

72.18

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Query:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA
        TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LA
Subjt:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA

Query:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        GEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A6J1DJ46 syndetin isoform X2

5.4e-40

72.18

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Query:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA
        TNVSS+GTTGIMNSVYMD  DP+RESR DSST STSGSP                             RVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LA
Subjt:  TNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSP----------------------------CRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLA

Query:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        GEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  GEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

5.4e-24

76.92

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Query:  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        RVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH+QSMH
Subjt:  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

5.4e-24

76.92

Show/hide

Query:  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        RVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH+QSMH
Subjt:  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

Sequences

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CDS sequence

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ATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAACATCAACCAG
TGGCTCTCCCTGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACAAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTG
GAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACTTACGGTAG

mRNA sequence

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Protein sequence

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MTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTTSTSGSPCRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMHLR

Spg024299 (gene) of Sponge gourd (cylindrica) v1 genome