; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024300 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024300
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:17031258..17035213
RNA-Seq ExpressionSpg024300
SyntenySpg024300
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.1e-0837.75Show/hide
Query:  IKGSREPRICVVCVRCISGNIGWES----RFNFFR----------------PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSE
        I+  REPRI    + C+S    W +     F+F +                PRGNR SLQT +L KT                 VEIELPV DTLP S+E
Subjt:  IKGSREPRICVVCVRCISGNIGWES----RFNFFR----------------PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSE

Query:  SLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRRP
        S    SGS  +    V   EDDV WLH +FR K AGG GG  + +     P
Subjt:  SLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRRP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.1e-0842.59Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAK
        PRGNR +L T KL KTVEIELPVPDTLPTS+ES                           VR++  +  EG    +  DD+ WLHA+F  K AG  GG  
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAK

Query:  SAYVASRR
             SRR
Subjt:  SAYVASRR

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]6.3e-0940.4Show/hide
Query:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRR
        RPRGNR SLQT KL KT                 VEIELPVPDTLPTS+ES    S S         +  DDV WLHA+FR K AGG GG  +  +A   
Subjt:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRR

Query:  PSVATLGLERLDAWQAPKKIPESRQRRDAVRRYTNLSGKKRKTSQRRVLGS
           A  G      W+  + I E +      R       KKRK   + V GS
Subjt:  PSVATLGLERLDAWQAPKKIPESRQRRDAVRRYTNLSGKKRKTSQRRVLGS

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.8e-0838.58Show/hide
Query:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEED
        N   PRGNRSSLQT +L KT                 VEIELPVPDTLPTS+ES                           VR +  +  EG    +  D
Subjt:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEED

Query:  DVRWLHAIFRTKLAGGLGGAKSAYVAS
        DV WLH +FR K+AGG GG  +  + S
Subjt:  DVRWLHAIFRTKLAGGLGGAKSAYVAS

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]6.9e-0839.29Show/hide
Query:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPT--SSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAY
        N   PRGNR SLQT +L KT                 VEIELPVPDTLPT     S VR +  +  EG    +  DDV WLHA+ R K+AGG GG     
Subjt:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPT--SSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAY

Query:  VASRRPSVATLGLERLDAWQAPKKI--PESRQRRDAVRRY
          SRR        +  D  Q+ ++I  PE  +  D  + Y
Subjt:  VASRRPSVATLGLERLDAWQAPKKI--PESRQRRDAVRRY

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein5.2e-0942.59Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAK
        PRGNR +L T KL KTVEIELPVPDTLPTS+ES                           VR++  +  EG    +  DD+ WLHA+F  K AG  GG  
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAK

Query:  SAYVASRR
             SRR
Subjt:  SAYVASRR

A0A5A7VIY9 Uncharacterized protein8.8e-0938.58Show/hide
Query:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEED
        N   PRGNRSSLQT +L KT                 VEIELPVPDTLPTS+ES                           VR +  +  EG    +  D
Subjt:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESL--------------------------VRLSGSMKQEGQRVSLEED

Query:  DVRWLHAIFRTKLAGGLGGAKSAYVAS
        DV WLH +FR K+AGG GG  +  + S
Subjt:  DVRWLHAIFRTKLAGGLGGAKSAYVAS

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.0e-0940.4Show/hide
Query:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRR
        RPRGNR SLQT KL KT                 VEIELPVPDTLPTS+ES    S S         +  DDV WLHA+FR K AGG GG  +  +A   
Subjt:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRR

Query:  PSVATLGLERLDAWQAPKKIPESRQRRDAVRRYTNLSGKKRKTSQRRVLGS
           A  G      W+  + I E +      R       KKRK   + V GS
Subjt:  PSVATLGLERLDAWQAPKKIPESRQRRDAVRRYTNLSGKKRKTSQRRVLGS

A0A5D3BSA6 Retrotrans_gag domain-containing protein5.2e-0937.75Show/hide
Query:  IKGSREPRICVVCVRCISGNIGWES----RFNFFR----------------PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSE
        I+  REPRI    + C+S    W +     F+F +                PRGNR SLQT +L KT                 VEIELPV DTLP S+E
Subjt:  IKGSREPRICVVCVRCISGNIGWES----RFNFFR----------------PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSSE

Query:  SLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRRP
        S    SGS  +    V   EDDV WLH +FR K AGG GG  + +     P
Subjt:  SLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAYVASRRP

A0A5D3CJL4 Retrotrans_gag domain-containing protein3.4e-0839.29Show/hide
Query:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPT--SSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAY
        N   PRGNR SLQT +L KT                 VEIELPVPDTLPT     S VR +  +  EG    +  DDV WLHA+ R K+AGG GG     
Subjt:  NFFRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPT--SSESLVRLSGSMKQEGQRVSLEEDDVRWLHAIFRTKLAGGLGGAKSAY

Query:  VASRRPSVATLGLERLDAWQAPKKI--PESRQRRDAVRRY
          SRR        +  D  Q+ ++I  PE  +  D  + Y
Subjt:  VASRRPSVATLGLERLDAWQAPKKI--PESRQRRDAVRRY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGCACTTCTACCTTTAAAGGAGTTTATAGATTCGGGTCTGAGAAACTGAGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGTG
CATTTCTGGAAATATTGGTTGGGAATCTCGTTTTAATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCC
CGGTGCCTGATACACTGCCAACGTCTTCTGAAAGTTTAGTACGTTTATCAGGTTCAATGAAGCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTT
CACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGCAAAATCCGCATATGTGGCTTCTAGAAGGCCTAGCGTCGCGACGCTAGGGCTAGAGCGTCTCGACGC
TTGGCAAGCTCCGAAGAAAATTCCAGAATCGCGACAACGTCGTGACGCTGTCCGACGCTACACCAACTTGAGCGGCAAGAAAAGGAAAACGTCACAGCGTCGCGTCTTGG
GCAGCAAGCCACCTCCGTTTCCTCACCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTGCACTTCTACCTTTAAAGGAGTTTATAGATTCGGGTCTGAGAAACTGAGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGTG
CATTTCTGGAAATATTGGTTGGGAATCTCGTTTTAATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCC
CGGTGCCTGATACACTGCCAACGTCTTCTGAAAGTTTAGTACGTTTATCAGGTTCAATGAAGCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTT
CACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGCAAAATCCGCATATGTGGCTTCTAGAAGGCCTAGCGTCGCGACGCTAGGGCTAGAGCGTCTCGACGC
TTGGCAAGCTCCGAAGAAAATTCCAGAATCGCGACAACGTCGTGACGCTGTCCGACGCTACACCAACTTGAGCGGCAAGAAAAGGAAAACGTCACAGCGTCGCGTCTTGG
GCAGCAAGCCACCTCCGTTTCCTCACCTATAA
Protein sequenceShow/hide protein sequence
MACTSTFKGVYRFGSEKLRRKIKGSREPRICVVCVRCISGNIGWESRFNFFRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSSESLVRLSGSMKQEGQRVSLEEDDVRWL
HAIFRTKLAGGLGGAKSAYVASRRPSVATLGLERLDAWQAPKKIPESRQRRDAVRRYTNLSGKKRKTSQRRVLGSKPPPFPHL