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Spg024306 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024306
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:18849077..18854120
RNA-Seq ExpressionSpg024306
SyntenySpg024306
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023871998.1 uncharacterized protein LOC111984613 [Quercus suber]1.9e-2550.38Show/hide
Query:  KKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG--WWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFMDD
        K+ L    G  VPS+  SGGL+LLWK+ LSV++ S S+ HIDA +  N+G   WRFTGFY       REES  LLKRL   +SLPW+  GDFNELM   +
Subjt:  KKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG--WWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFMDD

Query:  KEGGGRKDRKLMDNFCNTLNSCHLTVPGFNG
        KEGG  +  + M NFC  +NSC L   G+ G
Subjt:  KEGGGRKDRKLMDNFCNTLNSCHLTVPGFNG

XP_023897447.1 uncharacterized protein LOC112009345 [Quercus suber]4.9e-2642.51Show/hide
Query:  MPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQS--NEGWWRFTGFY----PRMREESQELLKRLKKVSSLPWL
        M  ++     EK     NF   + VPSVG SGGL L WKEGLSV +L S + HID  ++   +  WW  TGFY       R+ES  LLKR++  S LPWL
Subjt:  MPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQS--NEGWWRFTGFY----PRMREESQELLKRLKKVSSLPWL

Query:  IGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPG-TVRWQEFIKLTRDKRLDAVL
          GDFNE+ +  +KEGG  + R+ M NF +T+N C L   G+ GP  T  +Q        +RLD  L
Subjt:  IGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPG-TVRWQEFIKLTRDKRLDAVL

XP_023903659.1 uncharacterized protein LOC112015491 [Quercus suber]8.4e-2646.9Show/hide
Query:  IMPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG--WWRFTGFY----PRMREESQELLKRLKKVSSLPW
        +M  ++  A  +  K+ L    G  VPS+  SGGL+LLWK+ LSV++ S S+ HIDA +  N+G   WRFTGFY       REES  LLKRL   +SLPW
Subjt:  IMPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG--WWRFTGFY----PRMREESQELLKRLKKVSSLPW

Query:  LIGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNG
        +  GDFNELM   +KEGG  +  + M NFC  +NSC L   G+ G
Subjt:  LIGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNG

XP_024021734.1 uncharacterized protein LOC112091706 [Morus notabilis]7.1e-2543.45Show/hide
Query:  IMPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG-WWRFTGFYPRM----REESQELLKRLKKVSSLPWL
        +M  R+ +   E  K+   F  G+ V   G SGGL+L+WKE + V+I S S+ HID  ++   G WWRFTGFY       R  S  LL RLK +S+LPW+
Subjt:  IMPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG-WWRFTGFYPRM----REESQELLKRLKKVSSLPWL

Query:  IGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGP
        + GDFNE++F+  KEGG  +    M+ F +T+ SC L   GF GP
Subjt:  IGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGP

XP_030969682.1 uncharacterized protein LOC115989960 [Quercus lobata]1.1e-2542.94Show/hide
Query:  LEEKRKKD--------LNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNE-GWWRFTGF----YPRMREESQELLKRLKKVSSLPWLI
        +E K KKD            + + VPSVGNSGGL+LLWKE L V++ + S+ HIDA +   E GWW  TGF    Y   R ES   LK LK  +SLPWL+
Subjt:  LEEKRKKD--------LNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNE-GWWRFTGF----YPRMREESQELLKRLKKVSSLPWLI

Query:  GGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPG-TVRWQEFIKLTRDKRLDAVLIIAQIRYGSLH
         GDFNE+M + +KEGG  + RK M +F +T++ C L   GF G   T  +Q    +   +RLD  L  A + + SL+
Subjt:  GGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPG-TVRWQEFIKLTRDKRLDAVLIIAQIRYGSLH

TrEMBL top hitse value%identityAlignment
A0A5C7H399 CCHC-type domain-containing protein5.5e-2341.57Show/hide
Query:  EKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEGW-WRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFM
        E+ +  L+F+    V SVGNS GLLLLWK    V ++S S GHIDA +   +G+ WRF GFY       R  S  LL+RLK +++LPW+ G DFNE + M
Subjt:  EKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEGW-WRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFM

Query:  DDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPGTVRWQEFIKLTRD---KRLDAVLIIAQIRYG
        +DK GG       M  F   ++ C+LT  GF GP ++ W   I+  RD   +RLD  L +  +  G
Subjt:  DDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPGTVRWQEFIKLTRD---KRLDAVLIIAQIRYG

A0A5C7HJN1 Uncharacterized protein4.2e-2340.43Show/hide
Query:  RMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQ-SNEGWWRFTGFYPRM----REESQELLKRLKKVSSLPWLIGGD
        +++  + +  KK L F++G+SV   G SGGL+LLW     V++LS SKGHID  ++   E  WRF+GFY  +    + +S ELL+RL+ V    WL GGD
Subjt:  RMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQ-SNEGWWRFTGFYPRM----REESQELLKRLKKVSSLPWLIGGD

Query:  FNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGP
        FNE++ + +K GG  K    +  F   ++ C+L   GF GP
Subjt:  FNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGP

A0A5C7I4W9 RNase H domain-containing protein1.6e-2242.04Show/hide
Query:  KRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG-WWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFMD
        K ++ L ++ G+ V S G SGGLLLLWK    V +LS S GHIDA I  + G  WRF+G Y    P  R  +  L++RLK+V +LPW+ GGDFNEL+ M 
Subjt:  KRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG-WWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFMD

Query:  DKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPGTVRWQEFIKLTRD---KRLDAVL
        +K GG  K  + +  F   ++ C     GF+GP    W   ++  RD   +RLD +L
Subjt:  DKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPGTVRWQEFIKLTRD---KRLDAVL

A0A5C7I5K8 DUF4283 domain-containing protein5.0e-2441.84Show/hide
Query:  RMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG-WWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGD
        +ME    EK ++ L +  G+ V S+G+SGGLLLLW E  +V++ S S GHID  IQ  +G WW+F+G Y    P  R     L++RL++V  LPW+  GD
Subjt:  RMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEG-WWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGD

Query:  FNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGP
        FNEL+ + +K GG +K  + +  F   +  C L   GF+GP
Subjt:  FNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGP

A0A7N2REL6 Uncharacterized protein3.2e-2344.06Show/hide
Query:  VPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATI--QSNEGWWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFMDDKEGGGRKDRKL
        VPS G SGGL L WKEG+ ++I + S+ HIDA +  +   GWW  TGFY       R ES   L+ L K S LPWL+ GDFNE+  + +KEGG  + R+ 
Subjt:  VPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATI--QSNEGWWRFTGFY----PRMREESQELLKRLKKVSSLPWLIGGDFNELMFMDDKEGGGRKDRKL

Query:  MDNFCNTLNSCHLTVPGFNGPG-TVRWQEFIKLTRDKRLDAVL
        M NF +T+N C L   G+ GP  T  +Q    +   +RLD  L
Subjt:  MDNFCNTLNSCHLTVPGFNGPG-TVRWQEFIKLTRDKRLDAVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTAGACGTCGCTGCTGTGATGGTGACTGCCCACCCTGTTCAGAGGTTTCTATTGCTGTCTTTGGCTTTCACATTCAGTTCTTCAAGATCGATGTACACGAGCAA
GATTATGCCGAAAAGAATGGAAGCTGCATTGGAGGAGAAGAGGAAAAAAGATTTGAATTTTGACCACGGTTATAGTGTCCCAAGTGTGGGTAACAGTGGCGGCTTGCTAC
TCCTCTGGAAAGAAGGTCTCTCCGTTAACATTTTGTCGTCTTCCAAAGGACATATTGATGCCACTATTCAAAGCAATGAAGGTTGGTGGCGTTTCACAGGATTTTATCCA
AGAATGAGAGAGGAATCACAAGAGCTCTTAAAAAGACTCAAGAAAGTTTCTAGTCTCCCCTGGCTGATAGGGGGAGACTTTAATGAGCTGATGTTTATGGATGACAAGGA
GGGAGGAGGTAGGAAAGATCGAAAGCTAATGGACAATTTTTGCAATACTCTGAATTCTTGCCATCTGACTGTTCCAGGGTTTAATGGTCCTGGAACAGTCAGATGGCAAG
AATTCATAAAACTAACTAGAGATAAGCGTCTCGATGCTGTCCTGATTATCGCCCAAATCAGATATGGTTCTTTGCATCTCGGCGCTACCTCTCGGGTTTGCCACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTAGACGTCGCTGCTGTGATGGTGACTGCCCACCCTGTTCAGAGGTTTCTATTGCTGTCTTTGGCTTTCACATTCAGTTCTTCAAGATCGATGTACACGAGCAA
GATTATGCCGAAAAGAATGGAAGCTGCATTGGAGGAGAAGAGGAAAAAAGATTTGAATTTTGACCACGGTTATAGTGTCCCAAGTGTGGGTAACAGTGGCGGCTTGCTAC
TCCTCTGGAAAGAAGGTCTCTCCGTTAACATTTTGTCGTCTTCCAAAGGACATATTGATGCCACTATTCAAAGCAATGAAGGTTGGTGGCGTTTCACAGGATTTTATCCA
AGAATGAGAGAGGAATCACAAGAGCTCTTAAAAAGACTCAAGAAAGTTTCTAGTCTCCCCTGGCTGATAGGGGGAGACTTTAATGAGCTGATGTTTATGGATGACAAGGA
GGGAGGAGGTAGGAAAGATCGAAAGCTAATGGACAATTTTTGCAATACTCTGAATTCTTGCCATCTGACTGTTCCAGGGTTTAATGGTCCTGGAACAGTCAGATGGCAAG
AATTCATAAAACTAACTAGAGATAAGCGTCTCGATGCTGTCCTGATTATCGCCCAAATCAGATATGGTTCTTTGCATCTCGGCGCTACCTCTCGGGTTTGCCACTTTTGA
Protein sequenceShow/hide protein sequence
MLVDVAAVMVTAHPVQRFLLLSLAFTFSSSRSMYTSKIMPKRMEAALEEKRKKDLNFDHGYSVPSVGNSGGLLLLWKEGLSVNILSSSKGHIDATIQSNEGWWRFTGFYP
RMREESQELLKRLKKVSSLPWLIGGDFNELMFMDDKEGGGRKDRKLMDNFCNTLNSCHLTVPGFNGPGTVRWQEFIKLTRDKRLDAVLIIAQIRYGSLHLGATSRVCHF