; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024339 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024339
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationscaffold4:19790018..19795238
RNA-Seq ExpressionSpg024339
SyntenySpg024339
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB53755.1 hypothetical protein L484_022412 [Morus notabilis]2.0e-0737.37Show/hide
Query:  PHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL
        P F+   I  HGW  FC  P      +VREFYAN+ +     V V+ V V ++  AINS++ L +     Y + A   ++EQL     EV IEGA W++
Subjt:  PHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]2.1e-0933.77Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ
        +KR+   +       SE  E+  +E I+ +    E          KGF GD       P F+ D IT H W+LFC+ P+ + + +VREFYAN+   +   
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ

Query:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQ
        V VRGV V  S  AIN++Y L D P   ++E   A +  +L      V I GA+
Subjt:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQ

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]9.4e-1033.76Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ
        +KR+   +       SE  E+  +E I+ +    E          KGF GD       P F+ D IT H W+LFC+ P+     +VREFYAN+   +   
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ

Query:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL
        V VRGV V  S  AIN++Y L D P   ++E   A +  +L      V I GA+W +
Subjt:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL

PON90635.1 hypothetical protein TorRG33x02_134920 [Trema orientale]2.6e-0735.48Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKN---GKDKGKGFSGD----LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGF
        +KR+   +      DSE  E           A YE  +KN   G +KG  ++ +     P F+ D I  H W+LFC+  +     +VREFYAN+ + E  
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKN---GKDKGKGFSGD----LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGF

Query:  QVIVRGVAVDWSPGAINSLYNLHD
         V V+GV V WS  AIN+L+ L D
Subjt:  QVIVRGVAVDWSPGAINSLYNLHD

XP_022845662.1 uncharacterized protein LOC111368573 isoform X1 [Olea europaea var. sylvestris]2.6e-0733.33Show/hide
Query:  LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWR
        L +FL D I + GWE F  +P  V+  +V+EFY N NE+E F+V V    + +   +IN  Y+  D P+  Y+ +        L++  R +   GA+W+
Subjt:  LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWR

TrEMBL top hitse value%identityAlignment
A0A2P5B0K0 Uncharacterized protein1.0e-0933.77Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ
        +KR+   +       SE  E+  +E I+ +    E          KGF GD       P F+ D IT H W+LFC+ P+ + + +VREFYAN+   +   
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ

Query:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQ
        V VRGV V  S  AIN++Y L D P   ++E   A +  +L      V I GA+
Subjt:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQ

A0A2P5BCG4 Uncharacterized protein (Fragment)1.6e-0731.37Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKK--NAEYETELKNGKDKGKGFSGDLPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVR
        +KR+   +      ++E   +  +  I+ +  NAE    L N +  G+     LP F+   IT H W+ FC+ P+     +VREFYAN+ + E   V VR
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKK--NAEYETELKNGKDKGKGFSGDLPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVR

Query:  GVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL
        GV V WS  AIN+++ L D P   ++E     + + L      V   GA+W +
Subjt:  GVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL

A0A2P5CXV1 Uncharacterized protein4.6e-1033.76Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ
        +KR+   +       SE  E+  +E I+ +    E          KGF GD       P F+ D IT H W+LFC+ P+     +VREFYAN+   +   
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGD------LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQ

Query:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL
        V VRGV V  S  AIN++Y L D P   ++E   A +  +L      V I GA+W +
Subjt:  VIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL

A0A2P5EYL5 Uncharacterized protein1.2e-0735.48Show/hide
Query:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKN---GKDKGKGFSGD----LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGF
        +KR+   +      DSE  E           A YE  +KN   G +KG  ++ +     P F+ D I  H W+LFC+  +     +VREFYAN+ + E  
Subjt:  VKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKN---GKDKGKGFSGD----LPHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGF

Query:  QVIVRGVAVDWSPGAINSLYNLHD
         V V+GV V WS  AIN+L+ L D
Subjt:  QVIVRGVAVDWSPGAINSLYNLHD

W9QTD9 Uncharacterized protein9.5e-0837.37Show/hide
Query:  PHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL
        P F+   I  HGW  FC  P      +VREFYAN+ +     V V+ V V ++  AINS++ L +     Y + A   ++EQL     EV IEGA W++
Subjt:  PHFLRDGITNHGWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAGACCTAAGTGGAGTGCTCGGGACTCGAAGACGACACCAAACGGATCAAGTTTTCAAGCAGCCAAACAAGGAAGACCCGAGAGATGGTGTCTCGACGCCTC
GGATTCGAAGGGACGGAAAATTCACCGTCGGCATCGAGACGCCGGCCACAACACCTCGACACCAGCTCGCCTTTTTAAATACTGTGGCTTGCGATTAGAGCAGGAGCTGA
AGTTGGGACCTCGGGATTATCCAGTGACAAATCTTTACAAGAGCAAACTCCTCCCTACCAAGAAACAAGGAAAAGCGTCGTGCTTCATGGATATTTGGCAAGCTCTCGAT
CTCCTGTCTCGCTTGGATAGAGAGGGTCGAGAGTGCAGTGCAAGACAACTTTTCAGCTCCCAATTATCCACCACCCCCTTGCATCATAAATCACAAAGAAGTGAGAAGAA
ATTTCATATTCTAATGGCAAAAACGAGAGGAAAGAAAGAGGGAGAAGTGGAGGAGCATGTGCCTACTACGCCTGTAGAGAGGGAAGCCAAACGGCTCAAAAGGCTTCAAG
AGGCTGAGGTTTTCGCAGTATTAGAGAAGGTAATAGAAGACATTGTTGAGGAAGTTATCGCTGAGGAAGAACCAAAAGATTCTGAGAGCGAAAAAGATTTTGAAAAGATT
GACGAAACAGGGCAAGAGAATCAAGAAAAGAAAGCAACAGGGTTGCAAGGGCCAAATATGACTAAAACAGTGGAGCAGGAGATTTTGGAAGACATAGTGAATGATCTGCC
ACGCCGCCGTCGTAAGCAGAAAACAGGGCAGGTAAAAAGGATACGGACCAACAGTCCATCTCCTCCTTCGACTGACTCGGAGAAAGAAGAATCTGGAAATCAAGAAGAAA
TTAGGAAGAAGAATGCAGAATATGAAACCGAGTTGAAAAATGGTAAGGACAAGGGCAAAGGGTTCAGTGGTGATCTTCCGCATTTTCTGAGGGATGGCATCACAAACCAT
GGCTGGGAGTTATTCTGTTCCAAACCAGATCCTGTGAATTCACAAGTGGTGCGAGAATTCTACGCAAATATTAATGAGAACGAGGGTTTCCAAGTTATCGTTCGTGGAGT
AGCTGTCGATTGGAGTCCTGGTGCCATCAATTCGCTGTACAACCTTCATGATTTCCCGCACGCAGGTTATAATGAGATGGCAGTAGCGCCATCTAATGAGCAATTAAATG
ATGCAGCTCGGGAAGTTGGAATAGAAGGGGCACAATGGCGACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAAGACCTAAGTGGAGTGCTCGGGACTCGAAGACGACACCAAACGGATCAAGTTTTCAAGCAGCCAAACAAGGAAGACCCGAGAGATGGTGTCTCGACGCCTC
GGATTCGAAGGGACGGAAAATTCACCGTCGGCATCGAGACGCCGGCCACAACACCTCGACACCAGCTCGCCTTTTTAAATACTGTGGCTTGCGATTAGAGCAGGAGCTGA
AGTTGGGACCTCGGGATTATCCAGTGACAAATCTTTACAAGAGCAAACTCCTCCCTACCAAGAAACAAGGAAAAGCGTCGTGCTTCATGGATATTTGGCAAGCTCTCGAT
CTCCTGTCTCGCTTGGATAGAGAGGGTCGAGAGTGCAGTGCAAGACAACTTTTCAGCTCCCAATTATCCACCACCCCCTTGCATCATAAATCACAAAGAAGTGAGAAGAA
ATTTCATATTCTAATGGCAAAAACGAGAGGAAAGAAAGAGGGAGAAGTGGAGGAGCATGTGCCTACTACGCCTGTAGAGAGGGAAGCCAAACGGCTCAAAAGGCTTCAAG
AGGCTGAGGTTTTCGCAGTATTAGAGAAGGTAATAGAAGACATTGTTGAGGAAGTTATCGCTGAGGAAGAACCAAAAGATTCTGAGAGCGAAAAAGATTTTGAAAAGATT
GACGAAACAGGGCAAGAGAATCAAGAAAAGAAAGCAACAGGGTTGCAAGGGCCAAATATGACTAAAACAGTGGAGCAGGAGATTTTGGAAGACATAGTGAATGATCTGCC
ACGCCGCCGTCGTAAGCAGAAAACAGGGCAGGTAAAAAGGATACGGACCAACAGTCCATCTCCTCCTTCGACTGACTCGGAGAAAGAAGAATCTGGAAATCAAGAAGAAA
TTAGGAAGAAGAATGCAGAATATGAAACCGAGTTGAAAAATGGTAAGGACAAGGGCAAAGGGTTCAGTGGTGATCTTCCGCATTTTCTGAGGGATGGCATCACAAACCAT
GGCTGGGAGTTATTCTGTTCCAAACCAGATCCTGTGAATTCACAAGTGGTGCGAGAATTCTACGCAAATATTAATGAGAACGAGGGTTTCCAAGTTATCGTTCGTGGAGT
AGCTGTCGATTGGAGTCCTGGTGCCATCAATTCGCTGTACAACCTTCATGATTTCCCGCACGCAGGTTATAATGAGATGGCAGTAGCGCCATCTAATGAGCAATTAAATG
ATGCAGCTCGGGAAGTTGGAATAGAAGGGGCACAATGGCGACTGTAA
Protein sequenceShow/hide protein sequence
MAKRPKWSARDSKTTPNGSSFQAAKQGRPERWCLDASDSKGRKIHRRHRDAGHNTSTPARLFKYCGLRLEQELKLGPRDYPVTNLYKSKLLPTKKQGKASCFMDIWQALD
LLSRLDREGRECSARQLFSSQLSTTPLHHKSQRSEKKFHILMAKTRGKKEGEVEEHVPTTPVEREAKRLKRLQEAEVFAVLEKVIEDIVEEVIAEEEPKDSESEKDFEKI
DETGQENQEKKATGLQGPNMTKTVEQEILEDIVNDLPRRRRKQKTGQVKRIRTNSPSPPSTDSEKEESGNQEEIRKKNAEYETELKNGKDKGKGFSGDLPHFLRDGITNH
GWELFCSKPDPVNSQVVREFYANINENEGFQVIVRGVAVDWSPGAINSLYNLHDFPHAGYNEMAVAPSNEQLNDAAREVGIEGAQWRL