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Spg024345 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024345
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold4:19564530..19566600
RNA-Seq ExpressionSpg024345
SyntenySpg024345
Gene Ontology termsNA
InterPro domainsIPR015157 - Translation machinery associated TMA7
IPR044646 - Pentatricopeptide repeat-containing protein EMB1417-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21267.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.8e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

XP_008464896.1 PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis melo]4.8e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

XP_008464897.1 PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis melo]4.8e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

XP_011654973.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis sativus]4.8e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

XP_031740922.1 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis sativus]4.8e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

TrEMBL top hitse value%identityAlignment
A0A0A0KSA5 Uncharacterized protein2.3e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

A0A1S3CMN8 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X22.3e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

A0A1S3CP50 pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X12.3e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

A0A5A7UD21 Pentatricopeptide repeat-containing protein2.3e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

A0A5D3DC90 Pentatricopeptide repeat-containing protein2.3e-1795.83Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

SwissProt top hitse value%identityAlignment
Q2V3H0 Pentatricopeptide repeat-containing protein At4g18975, chloroplastic8.0e-1577.08Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

Q8LG95 Pentatricopeptide repeat-containing protein At4g211901.2e-0546.67Show/hide
Query:  NEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQK--GTF
        N KE VYG L+ +IAWE EFPL+   KAL IL     WK+ IQ      +K Q +  GT+
Subjt:  NEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQK--GTF

Arabidopsis top hitse value%identityAlignment
AT4G18975.1 Pentatricopeptide repeat (PPR) superfamily protein5.6e-1677.08Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

AT4G18975.2 Pentatricopeptide repeat (PPR) superfamily protein5.6e-1677.08Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

AT4G18975.3 Pentatricopeptide repeat (PPR) superfamily protein5.6e-1677.08Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

AT4G18975.4 Pentatricopeptide repeat (PPR) superfamily protein5.6e-1677.08Show/hide
Query:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ
        +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Subjt:  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ

AT4G21190.1 Pentatricopeptide repeat (PPR) superfamily protein8.2e-0746.67Show/hide
Query:  NEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQK--GTF
        N KE VYG L+ +IAWE EFPL+   KAL IL     WK+ IQ      +K Q +  GT+
Subjt:  NEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQK--GTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATACTCGCAGCTTTGC
TCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGA
ACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGTGGTT
GGATTGTTTTGTTTTGATTCTACAGCTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGAT
TGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAG
GTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATACTCGCAGCTTTGC
TCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGA
ACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGTGGTT
GGATTGTTTTGTTTTGATTCTACAGCTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGAT
TGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAG
GTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA
Protein sequenceShow/hide protein sequence
MMVEFSGEGGAKYFDDFDTCVHIHKGKYVSWYTRSFARACRRLRSFLSSRARSCCGIFFMLVLVVASSSCSKLNKLSGFWFSEQAEHLLRACRRLQSFLSSQTLIVDFVV
GLFCFDSTAVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQKGTFGGAGLKKSGKK