; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024346 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024346
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:20337565..20341043
RNA-Seq ExpressionSpg024346
SyntenySpg024346
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]3.0e-1060.87Show/hide
Query:  GSNARFW--LFD--------RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES
        G+   FW  LF         RPRGNRPSL+T KL KTVEIELP+P+TLPT AES  S S+TW+ELY ES
Subjt:  GSNARFW--LFD--------RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.1e-1243.59Show/hide
Query:  VVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSA
        +VLF L++L ++R ++ R   +           GG  V S+A  +                        PRGNRP+L T KL KTVEIELPVP+TLPTSA
Subjt:  VVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSA

Query:  ESSKSTSNTWVELYIES
        ESSKS S+TW+ELY ES
Subjt:  ESSKSTSNTWVELYIES

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]1.0e-1074Show/hide
Query:  DRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES
        + PRGNRPSL+  KL KTVEIELP+P+TLPTS+ESSKS S+TW+ELY ES
Subjt:  DRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]3.9e-1043.97Show/hide
Query:  VLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAE
        VLF L++L + ++    +               GV V S+A  +  +H+   D+  Y      W    PRGNRPSL+TR+L KT  IELPVP+TLPTSAE
Subjt:  VLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAE

Query:  SSKSTSNTWVELYIES
        SS S S+TW+ELY ES
Subjt:  SSKSTSNTWVELYIES

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]7.1e-1252.29Show/hide
Query:  RANEEDLWFSLVFRA--FGG-------VQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSN
        R+NEE+L  +L  R   F G        QVESEA F   + +  +  TT+      W    PRGNRPS +T KL KTVEIELPVP+TLPTSAESS S S+
Subjt:  RANEEDLWFSLVFRA--FGG-------VQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSN

Query:  TWVELYIES
        TW+ELY ES
Subjt:  TWVELYIES

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.4e-1060.87Show/hide
Query:  GSNARFW--LFD--------RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES
        G+   FW  LF         RPRGNRPSL+T KL KTVEIELP+P+TLPT AES  S S+TW+ELY ES
Subjt:  GSNARFW--LFD--------RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES

A0A5A7UAH6 CCHC-type domain-containing protein3.5e-1243.59Show/hide
Query:  VVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSA
        +VLF L++L ++R ++ R   +           GG  V S+A  +                        PRGNRP+L T KL KTVEIELPVP+TLPTSA
Subjt:  VVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSA

Query:  ESSKSTSNTWVELYIES
        ESSKS S+TW+ELY ES
Subjt:  ESSKSTSNTWVELYIES

A0A5A7V2F2 Uncharacterized protein5.0e-1174Show/hide
Query:  DRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES
        + PRGNRPSL+  KL KTVEIELP+P+TLPTS+ESSKS S+TW+ELY ES
Subjt:  DRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES

A0A5D3BET3 Uncharacterized protein3.5e-1252.29Show/hide
Query:  RANEEDLWFSLVFRA--FGG-------VQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSN
        R+NEE+L  +L  R   F G        QVESEA F   + +  +  TT+      W    PRGNRPS +T KL KTVEIELPVP+TLPTSAESS S S+
Subjt:  RANEEDLWFSLVFRA--FGG-------VQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSN

Query:  TWVELYIES
        TW+ELY ES
Subjt:  TWVELYIES

A0A5D3DWP3 Uncharacterized protein1.9e-1043.97Show/hide
Query:  VLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAE
        VLF L++L + ++    +               GV V S+A  +  +H+   D+  Y      W    PRGNRPSL+TR+L KT  IELPVP+TLPTSAE
Subjt:  VLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAE

Query:  SSKSTSNTWVELYIES
        SS S S+TW+ELY ES
Subjt:  SSKSTSNTWVELYIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTAGCGTCGAGACGCCGTGAGATCACAACAGGGGTAGTTCTTTTTGCCTTAACATTTTTAAGCGATGTAAGAGCACAGAATTTTCGTGCAAACGAGGAGGATCT
CTGGTTTTCTCTGGTTTTTCGAGCATTCGGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGTGTTTAGAATTCATGAGCATGGAAAAGACAAGACTACTTATGGTTCTA
ATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGCCGAGTCTAAAGACCAGGAAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTAATACACTGCCA
ACGTCTGCTGAAAGCTCCAAGTCGACTTCCAATACGTGGGTGGAGTTGTACATTGAGTCTTTTGTATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGTAGCGTCGAGACGCCGTGAGATCACAACAGGGGTAGTTCTTTTTGCCTTAACATTTTTAAGCGATGTAAGAGCACAGAATTTTCGTGCAAACGAGGAGGATCT
CTGGTTTTCTCTGGTTTTTCGAGCATTCGGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGTGTTTAGAATTCATGAGCATGGAAAAGACAAGACTACTTATGGTTCTA
ATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGCCGAGTCTAAAGACCAGGAAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTAATACACTGCCA
ACGTCTGCTGAAAGCTCCAAGTCGACTTCCAATACGTGGGTGGAGTTGTACATTGAGTCTTTTGTATTGTAA
Protein sequenceShow/hide protein sequence
MFVASRRREITTGVVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLP
TSAESSKSTSNTWVELYIESFVL