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Spg024350 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024350
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:21076672..21079225
RNA-Seq ExpressionSpg024350
SyntenySpg024350
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-3856.25Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV
        +S  E ++ PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPT    K +          S  LVEIEL V
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV

Query:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        PD LPTSAESSRS+SST LE Y ESV  +  + V ++             IVRGDDVCWLHA+FRAK AGGPGG V
Subjt:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-2749.18Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIE
        LFGL Y EG KRPRGNR+SLQTGELDKT              LSTLSVLRDNDAV                                         VEIE
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIE

Query:  LSVPDTLPTSAESSRSSSSTLLEFYIESVTFQ--------------TRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        L VPDTLPTSAESS S+SST LE   E V  +                FNVSV  T IVRGD+VCWLHAVF AK AGGPGG V
Subjt:  LSVPDTLPTSAESSRSSSSTLLEFYIESVTFQ--------------TRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.8e-3457.74Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG     +        P  RRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        SVPDTLPTSAESS S+S +                      GIVRGDDVCWLH VFRAK  GGPGG V
Subjt:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.8e-3457.74Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG     +        P  RRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        SVPDTLPTSAESS S+S +                      GIVRGDDVCWLH VFRAK  GGPGG V
Subjt:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-3856.25Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV
        +S  E ++ PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPT    K +          S  LVEIEL V
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV

Query:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        PD LPTSAESSRS+SST LE Y ESV  +  + V ++             IVRGDDVCWLHA+FRAK AGGPGG V
Subjt:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.2e-3856.25Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV
        +S  E ++ PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPT    K +          S  LVEIEL V
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV

Query:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        PD LPTSAESSRS+SST LE Y ESV  +  + V ++             IVRGDDVCWLHA+FRAK AGGPGG V
Subjt:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.3e-2749.18Show/hide
Query:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIE
        LFGL Y EG KRPRGNR+SLQTGELDKT              LSTLSVLRDNDAV                                         VEIE
Subjt:  LFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIE

Query:  LSVPDTLPTSAESSRSSSSTLLEFYIESVTFQ--------------TRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        L VPDTLPTSAESS S+SST LE   E V  +                FNVSV  T IVRGD+VCWLHAVF AK AGGPGG V
Subjt:  LSVPDTLPTSAESSRSSSSTLLEFYIESVTFQ--------------TRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5A7VGQ5 Uncharacterized protein8.7e-3557.74Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG     +        P  RRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        SVPDTLPTSAESS S+S +                      GIVRGDDVCWLH VFRAK  GGPGG V
Subjt:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3BG85 Uncharacterized protein8.7e-3557.74Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG     +        P  RRTSKRWLYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPT-RRTSKRWLYWACPTQRRSVML----------VEIEL

Query:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        SVPDTLPTSAESS S+S +                      GIVRGDDVCWLH VFRAK  GGPGG V
Subjt:  SVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3BTP3 Reverse transcriptase2.2e-3856.25Show/hide
Query:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV
        +S  E ++ PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPT    K +          S  LVEIEL V
Subjt:  LSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSV

Query:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        PD LPTSAESSRS+SST LE Y ESV  +  + V ++             IVRGDDVCWLHA+FRAK AGGPGG V
Subjt:  PDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVE----------PTGIVRGDDVCWLHAVFRAKLAGGPGGDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAACAGAGCTCCGACAATCGCTCGTACCTTATCGACACCCACAGACCACTGAGAGGACCATCCGGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGAT
CAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGA
CGATGGGAGTGCTGGGCGGGCCCCACTCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCAGTCATGTTAGTAGAGATCGAGCTCTCGGT
GCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTTGTTGGAGTTTTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAG
AGCCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTA
GCGGAGTATGGTCTGAGTATTGTTGAGAGTGAGTGCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAACAGAGCTCCGACAATCGCTCGTACCTTATCGACACCCACAGACCACTGAGAGGACCATCCGGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGAT
CAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGA
CGATGGGAGTGCTGGGCGGGCCCCACTCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCAGTCATGTTAGTAGAGATCGAGCTCTCGGT
GCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTTGTTGGAGTTTTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAG
AGCCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTA
GCGGAGTATGGTCTGAGTATTGTTGAGAGTGAGTGCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MRTELRQSLVPYRHPQTTERTIRGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLRQR
RWECWAGPTRRTSKRWLYWACPTQRRSVMLVEIELSVPDTLPTSAESSRSSSSTLLEFYIESVTFQTRFNVSVEPTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIEL
AEYGLSIVESECSQD