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Spg024359 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024359
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:21120755..21123600
RNA-Seq ExpressionSpg024359
SyntenySpg024359
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-2145.14Show/hide
Query:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS
        +PRGNR SLQT ++ KT             PL TLSVL DNDAV+SAG+APLRQRRW         RT     ++    +  S  LVEIELPVPD LPTS
Subjt:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS

Query:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS
        AESSR++S                                     +  DV  LHAIFR K AGGPGGGVTTW QS
Subjt:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.7e-1740.43Show/hide
Query:  MVGRLIQFPTTFMKSLPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVM
        MVG+LIQ+PTT MK LPRGNR SLQT +L KT              L TLSVL DND V+SAGRA LRQRRW                            
Subjt:  MVGRLIQFPTTFMKSLPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVM

Query:  LVEIELPVPDTLPTSAESSRTSSKEG-----------------------------------------DVRSLHAIFRTKLAGGPGGGV
         VEIELPVPDTLPTSA+ S  +   G                                         DV S+HA+F+ K AG PGGGV
Subjt:  LVEIELPVPDTLPTSAESSRTSSKEG-----------------------------------------DVRSLHAIFRTKLAGGPGGGV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.1e-2756.76Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAV+SAG     +    A R PLHRRTSKR LYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT
         VPDTLPTSAESS ++S+        DV  LH +FR K  GGPGG VT
Subjt:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.1e-2756.76Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAV+SAG     +    A R PLHRRTSKR LYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT
         VPDTLPTSAESS ++S+        DV  LH +FR K  GGPGG VT
Subjt:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-2145.14Show/hide
Query:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS
        +PRGNR SLQT ++ KT             PL TLSVL DNDAV+SAG+APLRQRRW         RT     ++    +  S  LVEIELPVPD LPTS
Subjt:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS

Query:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS
        AESSR++S                                     +  DV  LHAIFR K AGGPGGGVTTW QS
Subjt:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.6e-2145.14Show/hide
Query:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS
        +PRGNR SLQT ++ KT             PL TLSVL DNDAV+SAG+APLRQRRW         RT     ++    +  S  LVEIELPVPD LPTS
Subjt:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS

Query:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS
        AESSR++S                                     +  DV  LHAIFR K AGGPGGGVTTW QS
Subjt:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS

A0A5A7TPS6 Retrotrans_gag domain-containing protein8.3e-1840.43Show/hide
Query:  MVGRLIQFPTTFMKSLPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVM
        MVG+LIQ+PTT MK LPRGNR SLQT +L KT              L TLSVL DND V+SAGRA LRQRRW                            
Subjt:  MVGRLIQFPTTFMKSLPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVM

Query:  LVEIELPVPDTLPTSAESSRTSSKEG-----------------------------------------DVRSLHAIFRTKLAGGPGGGV
         VEIELPVPDTLPTSA+ S  +   G                                         DV S+HA+F+ K AG PGGGV
Subjt:  LVEIELPVPDTLPTSAESSRTSSKEG-----------------------------------------DVRSLHAIFRTKLAGGPGGGV

A0A5A7VGQ5 Uncharacterized protein5.2e-2856.76Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAV+SAG     +    A R PLHRRTSKR LYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT
         VPDTLPTSAESS ++S+        DV  LH +FR K  GGPGG VT
Subjt:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT

A0A5D3BG85 Uncharacterized protein5.2e-2856.76Show/hide
Query:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL
        PRGNRSSLQT +L KT              L TLSVLRDNDAV+SAG     +    A R PLHRRTSKR LYWACPT RRSVML          VEIEL
Subjt:  PRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVML----------VEIEL

Query:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT
         VPDTLPTSAESS ++S+        DV  LH +FR K  GGPGG VT
Subjt:  PVPDTLPTSAESSRTSSKEG------DVRSLHAIFRTKLAGGPGGGVT

A0A5D3BTP3 Reverse transcriptase1.6e-2145.14Show/hide
Query:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS
        +PRGNR SLQT ++ KT             PL TLSVL DNDAV+SAG+APLRQRRW         RT     ++    +  S  LVEIELPVPD LPTS
Subjt:  LPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPDTLPTS

Query:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS
        AESSR++S                                     +  DV  LHAIFR K AGGPGGGVTTW QS
Subjt:  AESSRTSS-------------------------------------KEGDVRSLHAIFRTKLAGGPGGGVTTWNQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAGGCTTATTCAATTTCCTACAACTTTCATGAAGAGTTTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATCTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAATGATGCTGTCATGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGGTG
CTGGGCGGGTCCCACTACATCGTAGGACTAGTAAACGTTTGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGAT
ACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAGGAGGGCGATGTTCGTTCGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGT
GACAACTTGGAATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAGGCTTATTCAATTTCCTACAACTTTCATGAAGAGTTTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATCTTCCGTTGTTGACGTTGAGTGTACTCCGTGACAATGATGCTGTCATGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGGTG
CTGGGCGGGTCCCACTACATCGTAGGACTAGTAAACGTTTGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGAT
ACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAGGAGGGCGATGTTCGTTCGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGT
GACAACTTGGAATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVGRLIQFPTTFMKSLPRGNRSSLQTRKLAKTPEAIWYRVHTGYLPLLTLSVLRDNDAVMSAGRAPLRQRRWGAGRVPLHRRTSKRLLYWACPTQRRSVMLVEIELPVPD
TLPTSAESSRTSSKEGDVRSLHAIFRTKLAGGPGGGVTTWNQSS