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Spg024370 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024370
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold4:23272309..23275794
RNA-Seq ExpressionSpg024370
SyntenySpg024370
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.7e-0571.05Show/hide
Query:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWE N  RWN LLP FR
Subjt:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.5e-0472.41Show/hide
Query:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
        + L  WGQD+VGSWE N IRWNSL+PDFR
Subjt:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.3e-0760.42Show/hide
Query:  ESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDRV SWE N  RWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFREADESGVTDTR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-0771.79Show/hide
Query:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFRE
        GESGQ  DSI L FWGQDRVGSWE N  RWNS +P FR+
Subjt:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFRE
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]8.5e-0472.41Show/hide
Query:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
        + L  WGQD+VGSWE N IRWNSL+PDFR
Subjt:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein4.1e-0472.41Show/hide
Query:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
        + L  WGQD+VGSWE N IRWNSL+PDFR
Subjt:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
A0A5A7SPG1 Pol protein1.3e-0571.05Show/hide
Query:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWE N  RWN LLP FR
Subjt:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein6.2e-0860.42Show/hide
Query:  ESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDRV SWE N  RWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFREADESGVTDTR
A0A5D3C3J6 Gag/pol protein1.4e-0771.79Show/hide
Query:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFRE
        GESGQ  DSI L FWGQDRVGSWE N  RWNS +P FR+
Subjt:  GESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein4.1e-0472.41Show/hide
Query:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
        + L  WGQD+VGSWE N IRWNSL+PDFR
Subjt:  ISLQFWGQDRVGSWEDNRIRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACAATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAAGATAATCGTATAAGATGGAATTCACTTCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGCAAAGAAATCAAGAGGGAGTTGTTGCGTTTTCGGTCGTTGGAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGAGCGTCTCG
ACGCTCTGCCCTCAGATTTTCAGCTTATGCAAATGTCTACAGCAACGTCTCGACGCTGAGATATCGGGTTGCTTGGCTGCCTTGGAACGGATTGTGAGATCCTCCAATGA
TGGGAATTGGAGGGATAAGCTTGTGGGTTCAAGCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACAATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAAGATAATCGTATAAGATGGAATTCACTTCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGCAAAGAAATCAAGAGGGAGTTGTTGCGTTTTCGGTCGTTGGAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGAGCGTCTCG
ACGCTCTGCCCTCAGATTTTCAGCTTATGCAAATGTCTACAGCAACGTCTCGACGCTGAGATATCGGGTTGCTTGGCTGCCTTGGAACGGATTGTGAGATCCTCCAATGA
TGGGAATTGGAGGGATAAGCTTGTGGGTTCAAGCCAATGA
Protein sequenceShow/hide protein sequence
MGESGQYADSISLQFWGQDRVGSWEDNRIRWNSLLPDFREADESGVTDTREGLTSRYWSISVDTENMSAVRRVQLSIRSHCKEIKRELLRFRSLEHRWRRTVKSTTKSVS
TLCPQIFSLCKCLQQRLDAEISGCLAALERIVRSSNDGNWRDKLVGSSQ