; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024373 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024373
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:22923400..22932073
RNA-Seq ExpressionSpg024373
SyntenySpg024373
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]1.9e-2344.16Show/hide
Query:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT----------------
        FGLSY EGTK  +        L GFL F +      V+K NQKLYL+        IESGKSGK +  +PRGNR SLQT +L  T                
Subjt:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT----------------

Query:  ----------------------VEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI
                              VEIELP+PD LPTSAESS+S+S+TW++L  E VH+   +LF KPS VR    +  +GF+GF CVVFHVEY I+KI
Subjt:  ----------------------VEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.5e-1265.67Show/hide
Query:  VPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAA
        +PRGNR +L T KL KTVEIELP+PDTLPTSAESS S+S+TW++L  E VH+   +LF KPS VR A
Subjt:  VPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAA

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]6.0e-1745.28Show/hide
Query:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAE
        FGLSY E T R+  F +      GFL F E      V K NQKLYL      S  +++G+  K     P    S L+   +   VEIELP+ DTL TSAE
Subjt:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAE

Query:  SSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI
        SS S+S+TW+ L  E +H+   +LF KPS V     +  +GF+GFRCVVFHVEY I+KI
Subjt:  SSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.6e-1245.52Show/hide
Query:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT---------------V
        F LSY EGTK +  F +      GFL F +      ++K NQKLYL  + V    +E+ KSG     +PRGNR SLQTR+L KT               V
Subjt:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT---------------V

Query:  EIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHI
         IELP+PD LPTSAESS S+S+TW++L  E VH+
Subjt:  EIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]3.4e-1257.89Show/hide
Query:  EVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPMLQGFQG
        E+PRGNR SLQ  KL KTVEIELPMPDTLPTS+ESS S+S+TW++L  E VH+     F+K        M  G QG
Subjt:  EVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPMLQGFQG

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein9.3e-2444.16Show/hide
Query:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT----------------
        FGLSY EGTK  +        L GFL F +      V+K NQKLYL+        IESGKSGK +  +PRGNR SLQT +L  T                
Subjt:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT----------------

Query:  ----------------------VEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI
                              VEIELP+PD LPTSAESS+S+S+TW++L  E VH+   +LF KPS VR    +  +GF+GF CVVFHVEY I+KI
Subjt:  ----------------------VEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI

A0A5A7UAH6 CCHC-type domain-containing protein7.4e-1365.67Show/hide
Query:  VPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAA
        +PRGNR +L T KL KTVEIELP+PDTLPTSAESS S+S+TW++L  E VH+   +LF KPS VR A
Subjt:  VPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAA

A0A5A7UEC1 Uncharacterized protein2.9e-1745.28Show/hide
Query:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAE
        FGLSY E T R+  F +      GFL F E      V K NQKLYL      S  +++G+  K     P    S L+   +   VEIELP+ DTL TSAE
Subjt:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAE

Query:  SSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI
        SS S+S+TW+ L  E +H+   +LF KPS V     +  +GF+GFRCVVFHVEY I+KI
Subjt:  SSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPML--QGFQGFRCVVFHVEYFITKI

A0A5A7UT17 CCHC-type domain-containing protein1.3e-1245.52Show/hide
Query:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT---------------V
        F LSY EGTK +  F +      GFL F +      ++K NQKLYL  + V    +E+ KSG     +PRGNR SLQTR+L KT               V
Subjt:  FGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFG---VYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKT---------------V

Query:  EIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHI
         IELP+PD LPTSAESS S+S+TW++L  E VH+
Subjt:  EIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHI

A0A5A7V2F2 Uncharacterized protein1.6e-1257.89Show/hide
Query:  EVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPMLQGFQG
        E+PRGNR SLQ  KL KTVEIELPMPDTLPTS+ESS S+S+TW++L  E VH+     F+K        M  G QG
Subjt:  EVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPMLQGFQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTGAATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTC
TGGTTTTCTCTGGTTTTTCGAGCATTTTGGGGTGTACAAGTTGAATCAGAAACTCTATTTGGAAGGTATGAGTGTTGGAAGTTTTGGTATTGAATCTGGAAAATCTGGAA
AAGTAGAATGTGAAGTGCCAAGAGGAAATAGGTCGAGTCTACAAACGAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCT
GAAAGTTCCAGTTCAAGCTCCAATACCTGGGTGGACTTGCTCATTGAGTTTGTCCATATTGTAAATGTTTTGTTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTAT
GTTACAAGGTTTTCAAGGATTCCGCTGTGTTGTGTTTCATGTAGAATATTTTATAACTAAGATTGTTCCGAATACGGAGGGAGAGCACACAGAGGAAGTTCAAGAAAAAC
AGGCCGAGGATGCGCAAGAGGATAGGACAGAGGATGTTCAGGAAACAGACAATGAGCAGGTGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCAGAAGTGCCA
AAACGTCGTCGCGTGAAGCGAAAAGCTGGAGGCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGAAGGATTATGAGAAAGAAGATGCAGAAAGAGAGGAACA
GGAGAAAAAGGAGGCTGAGGACAGAGTGAGAGAGGAAGCAGGAAAGAAAGCAGCGGAAGAAACTTTGACAAAGCATCAAGAAGACAGAGGCAAAGGAATTTTTGAAGCAT
TGGATGAACCTATAGAGGAAACAGAAGAAGGACCATTCATCCGCTTCGTCAATGAACTTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTGAATTCGGTTTGAGCTACACAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTC
TGGTTTTCTCTGGTTTTTCGAGCATTTTGGGGTGTACAAGTTGAATCAGAAACTCTATTTGGAAGGTATGAGTGTTGGAAGTTTTGGTATTGAATCTGGAAAATCTGGAA
AAGTAGAATGTGAAGTGCCAAGAGGAAATAGGTCGAGTCTACAAACGAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCT
GAAAGTTCCAGTTCAAGCTCCAATACCTGGGTGGACTTGCTCATTGAGTTTGTCCATATTGTAAATGTTTTGTTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTAT
GTTACAAGGTTTTCAAGGATTCCGCTGTGTTGTGTTTCATGTAGAATATTTTATAACTAAGATTGTTCCGAATACGGAGGGAGAGCACACAGAGGAAGTTCAAGAAAAAC
AGGCCGAGGATGCGCAAGAGGATAGGACAGAGGATGTTCAGGAAACAGACAATGAGCAGGTGGAACAAGAGCAGGAGGCTCGAGTGGAGGTGATCATGCCAGAAGTGCCA
AAACGTCGTCGCGTGAAGCGAAAAGCTGGAGGCGTCAAGGTAGTCCGAACTGATACCCCATCACCACCGTCGAAGGATTATGAGAAAGAAGATGCAGAAAGAGAGGAACA
GGAGAAAAAGGAGGCTGAGGACAGAGTGAGAGAGGAAGCAGGAAAGAAAGCAGCGGAAGAAACTTTGACAAAGCATCAAGAAGACAGAGGCAAAGGAATTTTTGAAGCAT
TGGATGAACCTATAGAGGAAACAGAAGAAGGACCATTCATCCGCTTCGTCAATGAACTTGCCTGA
Protein sequenceShow/hide protein sequence
MAESGFNMPISGFEFGLSYTEGTKRAQDFRANQEDLSGFLWFFEHFGVYKLNQKLYLEGMSVGSFGIESGKSGKVECEVPRGNRSSLQTRKLAKTVEIELPMPDTLPTSA
ESSSSSSNTWVDLLIEFVHIVNVLLFSKPSYVRAAPMLQGFQGFRCVVFHVEYFITKIVPNTEGEHTEEVQEKQAEDAQEDRTEDVQETDNEQVEQEQEARVEVIMPEVP
KRRRVKRKAGGVKVVRTDTPSPPSKDYEKEDAEREEQEKKEAEDRVREEAGKKAAEETLTKHQEDRGKGIFEALDEPIEETEEGPFIRFVNELA