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Spg024382 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024382
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:23049576..23050616
RNA-Seq ExpressionSpg024382
SyntenySpg024382
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.9e-1957Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS+S+ +TW+ELY ES       Y+ N       ++FNV  G    +  DDV WLHA+F+ K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-1553.85Show/hide
Query:  VEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS+S+SSTW+ELY ES       Y+ N       ++F+V  G    +  DDV WLHA+F+AK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQ

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-2158.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+ELY+E F +V + +         + EDDV WLHA+F+AK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.7e-1751.2Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFN-----------VQEGQRVSLEEDDVR
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE  +S+SSTW+ELY+ES  +V +LF              EG    +  DDV 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFN-----------VQEGQRVSLEEDDVR

Query:  WLHAIFQAKLAGGP-GGDVGSVQIE
        WLHA+F+AK AGGP GG  GSV ++
Subjt:  WLHAIFQAKLAGGP-GGDVGSVQIE

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-2158.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+ELY+E F +V + +         + EDDV WLHA+F+AK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.9e-1957Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS+S+ +TW+ELY ES       Y+ N       ++FNV  G    +  DDV WLHA+F+ K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPG

A0A5A7V9N3 Reverse transcriptase3.7e-1553.85Show/hide
Query:  VEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS+S+SSTW+ELY ES       Y+ N       ++F+V  G    +  DDV WLHA+F+AK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSKSSSSTWVELYIESF------YYVN-------VLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQ

A0A5A7VMG9 Reverse transcriptase2.6e-2158.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+ELY+E F +V + +         + EDDV WLHA+F+AK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.3e-1751.2Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFN-----------VQEGQRVSLEEDDVR
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE  +S+SSTW+ELY+ES  +V +LF              EG    +  DDV 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFN-----------VQEGQRVSLEEDDVR

Query:  WLHAIFQAKLAGGP-GGDVGSVQIE
        WLHA+F+AK AGGP GG  GSV ++
Subjt:  WLHAIFQAKLAGGP-GGDVGSVQIE

A0A5D3DX39 Reverse transcriptase2.6e-2158.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS+S+SSTW+ELY+E F +V + +         + EDDV WLHA+F+AK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTTTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGATCAGTTCAGATAGAACTAGCAGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGT
CAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTTTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCAGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGATCAGTTCAGATAGAACTAGCAGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGT
CAGGACTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSKSSSSTWVELYIESFYYVNVLFNVQEGQRVSLEEDDVRWLHAIFQAKLAGGPGGDVGSVQIELAEYGPSIVESESS
QD