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Spg024386 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024386
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold4:23374299..23376060
RNA-Seq ExpressionSpg024386
SyntenySpg024386
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0651.95Show/hide
Query:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        +  +K+++ +   K GK         +  +SG  L T+   PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0680.49Show/hide
Query:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        T    PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]5.2e-0791.67Show/hide
Query:  LLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSSR
        L TLSVLHDNDAVVEIELPVPDTLPTSAESS+S+SR
Subjt:  LLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSSR

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.4e-0651.95Show/hide
Query:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        +  +K+++ +   K GK         +  +SG  L T+   PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-0680.49Show/hide
Query:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        T    PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.6e-0651.95Show/hide
Query:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        +  +K+++ +   K GK         +  +SG  L T+   PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5A7VMG9 Reverse transcriptase1.6e-0680.49Show/hide
Query:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        T    PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5D3CIF4 Gag protease polyprotein2.5e-0791.67Show/hide
Query:  LLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSSR
        L TLSVLHDNDAVVEIELPVPDTLPTSAESS+S+SR
Subjt:  LLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSSR

A0A5D3DSY7 Putative Retrotransposon protein1.6e-0651.95Show/hide
Query:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        +  +K+++ +   K GK         +  +SG  L T+   PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  RKKKKIFVVLRLKKIGK----AHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5D3DX39 Reverse transcriptase1.6e-0680.49Show/hide
Query:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS
        T    PL TLSVL DNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  TSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATCAACCTGTCAACCTCTGGTTA
TATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCT
CCAGAAAGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATCAACCTGTCAACCTCTGGTTA
TATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCT
CCAGAAAGCGATGA
Protein sequenceShow/hide protein sequence
MRKKKKIFVVLRLKKIGKAHAKPAIAESGINLSTSGYIPLLTLSVLHDNDAVVEIELPVPDTLPTSAESSRSSSRKR